Shewanella oneidensis: SO_2896
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Entry
SO_2896 CDS
T00099
Symbol
ligA
Name
(GenBank) DNA ligase NAD-dependent LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
son
Shewanella oneidensis
Pathway
son03030
DNA replication
son03410
Base excision repair
son03420
Nucleotide excision repair
son03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
son00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SO_2896 (ligA)
03410 Base excision repair
SO_2896 (ligA)
03420 Nucleotide excision repair
SO_2896 (ligA)
03430 Mismatch repair
SO_2896 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
son03032
]
SO_2896 (ligA)
03400 DNA repair and recombination proteins [BR:
son03400
]
SO_2896 (ligA)
Enzymes [BR:
son01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SO_2896 (ligA)
DNA replication proteins [BR:
son03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SO_2896 (ligA)
DNA repair and recombination proteins [BR:
son03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SO_2896 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SO_2896 (ligA)
MMR (mismatch excision repair)
DNA ligase
SO_2896 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SO_2896 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AAN55912
UniProt:
Q8ED70
LinkDB
All DBs
Position
complement(3017755..3019824)
Genome browser
AA seq
689 aa
AA seq
DB search
MQDIQLDKRLSELLSQAVTPQTAQPLMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQQ
LKKLEAEYPQFVLADSPTQRVGGLALAKFEQITHLKPMLSLDNAFDEADFTAFHKRVSDR
VGQVSFCCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLRLRGNNY
PELVEVRGEAFMPKAAFEALNERARLKDDKQFVNPRNAAAGSLRQLDSKITASRALSFYA
YALGVVEPSSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELNQVFAYYKDILTRRSDLPF
EIDGVVMKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVAR
LKPVFVGGVTVSNATLHNADEIERLGVMVGDTVIIRRAGDVIPQIVAIVPERRSEDAQAI
VFPQHCPVCGSLVERLEGEAVARCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKIVEQL
IDKELVQSPADLFKLTASMMTMLDRMGMKSATNLALAIEAAKTTTLPRFLYALGIREVGE
ATAANLAAHFGSLDALRIATIEQLIEVEDIGEVVAQHVAHFFAQPHNLEVIDALIAAGVN
WPAIEAPSADEQPLKGQTWVLTGTLNQLNRNDAKAQLQVLGAKVAGSVSKNTDCLVAGEA
AGSKLAKAQELGVKVIGEDELLALLAANR
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacattcaactcgataaacgcctttctgaactgctttctcaagctgttacacca
caaaccgcgcagccattgatgcaggcgctcagccaatctctcaatgaacacaatattcgt
tactatgtggatgatgcgccaagcattaccgattccgaatacgacagattaatgcaacag
cttaaaaagctcgaggcagagtatcctcagtttgtcttagccgattcgccaacccaaaga
gtgggcggcctggcactggccaagtttgagcagattactcatcttaaacccatgttaagc
ctcgataatgcctttgatgaagcggactttacagcgtttcataagcgagtgagtgataga
gtgggtcaagtgagcttttgctgtgagcctaaactcgatggtctcgcggtgagtatttta
tatcgcaacggtgtgcttgagcgcgccgctacccgtggcgatggcactgtgggcgaggat
attaccgaaaacgtcaaaaccattaaatcaattccacttaggttgcgtggcaacaattat
cccgaattggttgaagtgcgcggcgaagcctttatgcccaaggcggcgtttgaggcacta
aatgagcgtgcacgtttaaaggatgacaaacagtttgtgaatccacgtaacgcggcggcg
ggtagtttacgccagctcgatagcaaaattaccgcctcgcgagcgctgtcgttttatgcc
tatgcattaggtgtagttgaaccaagctcccatgaattagccaagacccattatgagcaa
ttacagcaacttaaatcttgggggctgcccgtcagcagcgagattaaagtttgtgatgaa
cttaaccaagtctttgcttattataaagatattttgacaagacgcagtgatttacccttt
gaaattgacggcgtggtgatgaaggttaacgatattgcccagcagcaaaccttaggtttt
gtagcaaagtctccccgctgggcgattgcctataagtttcctgcacaggaagaaatgact
ctgctcgaaggtgtggattttcaagtgggccgcaccggcgccgttacgcctgtggcgcgc
ttaaaacctgtgttcgtcggtggggtaactgtgtctaatgccaccttgcacaatgccgat
gaaatcgagcgtttaggcgtaatggtcggcgatactgtgattattcgccgcgccggtgat
gtgatcccgcaaattgtggccattgtacccgagcgccgctctgaggatgcgcaggcgatt
gtgtttccacaacattgccctgtgtgtggcagcttggtcgagcgtttagagggggaagcg
gtagcccgttgcagtggcggcttattctgcgaggcgcagcgcaaagaagcgattaaacat
tttgcttcccgcaaggcattagatatcgatggtatgggcgacaaaattgttgagcagctc
attgataaagagctggttcaaagccccgcagatctgtttaaactcaccgcctctatgatg
accatgctcgaccgtatgggaatgaagtccgccaccaatttagcgctcgccattgaagcg
gctaaaaccaccaccttgccacgtttcttgtatgctttaggcattcgtgaggtgggtgag
gccactgcggcaaaccttgcggcacactttggtagcctagatgcactgcgcatcgccact
attgaacaattaatcgaggttgaagatatcggcgaagtggttgcccagcatgtagcacat
ttttttgcccagccccataaccttgaggtaatcgatgccttaattgcggcgggggtaaac
tggcctgcgattgaagcgccaagcgccgacgagcaaccattaaaaggacaaacgtgggtg
ttaacgggtaccttaaatcaactcaaccgtaacgatgctaaggcgcaattacaagtctta
ggcgcaaaagtcgcgggcagtgtgtcgaaaaacaccgactgcttagtggcgggtgaagcg
gccggatctaagctggcaaaagcgcaggagctaggcgtgaaggtgattggcgaagacgag
ctactcgctttacttgcggctaatcgttaa
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integrated database retrieval system
