Sphingobacterium oryzagri: PQ465_08815
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Entry
PQ465_08815 CDS
T10198
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sop Sphingobacterium oryzagri
Pathway
sop03030
DNA replication
sop03410
Base excision repair
sop03420
Nucleotide excision repair
sop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PQ465_08815 (ligA)
03410 Base excision repair
PQ465_08815 (ligA)
03420 Nucleotide excision repair
PQ465_08815 (ligA)
03430 Mismatch repair
PQ465_08815 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sop03032
]
PQ465_08815 (ligA)
03400 DNA repair and recombination proteins [BR:
sop03400
]
PQ465_08815 (ligA)
Enzymes [BR:
sop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PQ465_08815 (ligA)
DNA replication proteins [BR:
sop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PQ465_08815 (ligA)
DNA repair and recombination proteins [BR:
sop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PQ465_08815 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PQ465_08815 (ligA)
MMR (mismatch excision repair)
DNA ligase
PQ465_08815 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PQ465_08815 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
Nlig-Ia
PTCB-BRCT
Auto_anti-p27
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WDF70460
UniProt:
A0ABY7WLT6
LinkDB
All DBs
Position
complement(2155352..2157370)
Genome browser
AA seq
672 aa
AA seq
DB search
MLADIQERIAHLTTELNAYNYQYYVLANSVVSDYDFDQKLKELEALEAAYPQFKDPNSPT
AKVGGDITQKFNTVRHRWPMLSLGNTYNEQELREFDERVRKVVGDEVTYVCELKFDGLSI
SLTYEQGVLQRAVTRGDGTQGDEVTNNVKTIRSVPHRLKKGDYPEEFEIRGEIFMHRAAF
ERLNKQREDEGVQTYANPRNFASGTIKLQDPKEVAKRPLDCFLYFLYAENRNKRFDSHWE
SIQAVKSWGFQICEHTALCVTIDEIIDFVNHWDSERHKLSYDIDGIVIKVNDYAQQEELG
FTAKSPRWAISYKYKAERVETTLNSVSYQVGRTGAVTPVANLAPVLLAGTTVKRASLHNA
NEIARLDLHEGDTVYVEKGGEIIPKIIGVNNEKRVTHTAPIVYPSVCPECGTQLVRQEGE
AVHYCPNEAGCRPQIVGKLQHFIGRKMMDIQGMGDETMETFFKLGLLRKIADIYSLKDHQ
EELKGLARFGEKSIDNMLTGIELSKEKPFEKVLFALGIRHVGETIAKKLAQHFKHIDQLI
AASAEEMAAVQDIGGRIADSVYNYLHDPQHLMEIGRLREAGLQFEIIEQEVQLAGNSLSG
KTFLISGVFADFSREELAQLIESHGGKMVSSISAKLNYLVAGDKMGPSKLAKAEKLQVPI
ISDRDILQMINQ
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgttagcagacattcaggagcgaattgcccatcttactaccgagcttaatgcttacaat
tatcagtattatgtattggccaattccgttgtttccgattacgattttgatcaaaaatta
aaagaactggaggccttggaagcggcgtatccacaattcaaagatcccaactcgccaacc
gcaaaggtaggtggcgacattacgcaaaagtttaacacggtgcgtcatcgctggcctatg
ttatcgttgggcaatacgtacaacgaacaggagctgcgcgagtttgatgagcgggtgcgc
aaagtcgttggcgatgaggtaacgtatgtttgcgaattaaaattcgacggcctctcgatc
tcacttacttacgagcaaggcgttttgcaacgtgccgtaacgcgtggagatggcacacaa
ggtgatgaggtcacaaacaatgtgaagacgatacgtagtgtacctcatcgcttgaagaaa
ggtgactatcccgaagagtttgaaatacgtggtgagattttcatgcaccgggccgctttc
gagcgcctgaataaacagcgtgaagatgaaggcgtgcaaacatatgccaatccgcgcaac
tttgcttctggaacaatcaaactgcaagaccccaaagaagtggctaaacgcccgctggat
tgctttttatattttctttatgcggaaaaccggaacaaacgctttgatagccattgggaa
agtatacaggcggtaaaaagctggggatttcaaatctgcgagcataccgcattatgcgta
acaattgacgagattatcgactttgtgaaccattgggatagcgaacgccataaattgtcc
tacgatatcgatggtatcgtcattaaagtaaacgattatgcgcagcaagaggaactgggt
tttacggcaaaatcacctcgctgggccatttcctacaaatacaaagccgagcgcgtagaa
acgacattaaacagtgtctcctaccaagtggggcgtaccggcgcagtaacgccggtggcc
aacctagcgcctgttttattggcgggcactacggtaaagcgcgcttcgctgcacaatgcc
aacgagattgcgcgtttagatctgcacgaaggcgataccgtttacgtggaaaaaggtggc
gaaatcattccaaagattattggcgttaataacgaaaaacgtgttacgcacaccgccccg
attgtatatccgagtgtttgtcccgaatgtggaacgcagctcgtgcgccaagaaggcgaa
gcggtacattactgtccgaatgaagccggatgccgaccacagatcgttggcaaattgcaa
cattttatcgggcgtaaaatgatggatattcagggcatgggcgatgaaacgatggaaacc
ttttttaaactcggtttattgcgcaagattgccgatatctactccttaaaagaccatcag
gaagaactgaaaggactggcacggtttggcgaaaaatccatcgacaatatgcttacgggt
attgagctttctaaagaaaagcctttcgaaaaagttctttttgccttgggcattcgccac
gtcggtgaaactatcgcaaaaaaattagcccagcactttaaacatattgaccagctaatt
gctgcaagcgccgaagagatggccgctgtgcaagacattggcggtagaatcgcggacagc
gtatacaattacctgcacgatccacaacatttgatggagattggccgcttacgcgaagct
ggtcttcaattcgaaattatcgagcaggaagttcaattggcaggcaatagcctgagtggc
aaaacatttttgatatcgggcgtttttgccgatttctcgcgcgaagaacttgcgcaactg
attgagtcgcacggcggaaaaatggtatccagtatatccgcaaaattaaactatttggta
gctggcgataaaatggggccgtcaaagctcgctaaagccgaaaagttacaggtgccgatt
atttctgatcgggatattttacagatgattaatcaataa
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integrated database retrieval system
