Sorangium sp. So ce836: NQZ70_05759
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Entry
NQZ70_05759 CDS
T11263
Symbol
ligA_1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sorg Sorangium sp. So ce836
Pathway
sorg03030
DNA replication
sorg03410
Base excision repair
sorg03420
Nucleotide excision repair
sorg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sorg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NQZ70_05759 (ligA_1)
03410 Base excision repair
NQZ70_05759 (ligA_1)
03420 Nucleotide excision repair
NQZ70_05759 (ligA_1)
03430 Mismatch repair
NQZ70_05759 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sorg03032
]
NQZ70_05759 (ligA_1)
03400 DNA repair and recombination proteins [BR:
sorg03400
]
NQZ70_05759 (ligA_1)
Enzymes [BR:
sorg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NQZ70_05759 (ligA_1)
DNA replication proteins [BR:
sorg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NQZ70_05759 (ligA_1)
DNA repair and recombination proteins [BR:
sorg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NQZ70_05759 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NQZ70_05759 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
NQZ70_05759 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NQZ70_05759 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
BRCT
HHH_2
PTCB-BRCT
BRCT_2
DNA_pol_lambd_f
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WCQ93013
LinkDB
All DBs
Position
7926168..7928192
Genome browser
AA seq
674 aa
AA seq
DB search
MTQAHHDEAGAQSPLQGGLATDPKHKARIDELAERIEKYRASYYAGHPEISDAAFDALED
ELRALDPTHPVLARVGSASLITEWEKARHEIPMGSLNKVVSEDELRAWVARCDELLAKDA
HDGDGAAQPASSGRASVADDLFVAEKLDGISIEVIYKGGKLVDAITRGDGEWGERITANV
ARMKGVPSRIRERGRLSVRGEIILRLSDMKRYFPGVTSPRNMAAGASKRFDGQGAEHCTV
LFYDVADHLEIPTCRARFAWLRELGFATPQTAHGNVEDVVKLYRRYSSELRAGLDYEIDG
LVVYVDSLHFQGLLGDVNRRPRGAVAFKFASPAKVTTVVAIQWDTGPSGRVTPVAIVEPV
ELAGANVRRASLHNAANVRSLGIGVGDEVLVSRRNDVIPYVEEVVEKRGPAAVPPSVCPV
CSAPLVVEGEYLLCRNAACRALIEGRIHNWIDAIGALEWGDKLIEQVVAAGLVREPLDLY
KLTVKDIAELDRRGEKSATKCLDQLKSRLPLTLPIFLAALGIEGFAIQTARLLVSAGYTT
IEKLLAAGEDELAGIPGLGAIKAASIVRGLRARSDEIARLLAAGIEPVAPEAEGPLAGLT
FCFTGAATRSRGELTHLVESNGGRVLNSVTKELNYLVLADVASASSKAVKARKYGTKLIT
EDDLDKLIAERRGG
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaggcacaccacgacgaggccggagcgcagagcccgctgcagggcgggctcgcg
acggatccgaagcacaaggccaggatcgatgagctcgccgagcgcatcgagaagtacagg
gcgagctactacgcagggcacccggagatctcggacgccgcgttcgacgccctcgaggac
gagctccgcgccctggatcccacgcacccggtgctcgcccgcgtcggctccgcctccctc
atcacggagtgggagaaggcgcggcacgagatcccgatgggctcgctcaacaaggtcgtc
tccgaggacgagctccgggcctgggtcgcccggtgcgacgagctcctcgcgaaggacgcg
cacgacggcgacggcgcggcgcagccggcgagctccggccgcgcgagcgtggcggacgac
ctcttcgtcgcggagaagctcgacggcatctccatcgaggtcatctacaagggcggcaag
ctcgtcgacgccatcacccgcggcgacggcgagtggggcgagcggatcaccgcgaacgtc
gcgaggatgaagggcgtcccctcgcggatccgggagcggggacggctgtccgtgcgcggc
gagatcatcctccgcctctcggacatgaagcgctacttccccggcgtcaccagcccgcgc
aacatggccgcgggcgcgtccaaacggttcgacggccagggggcggagcactgcacggtg
ctgttctacgacgtcgccgaccacctcgagatcccgacgtgccgggcgcgcttcgcgtgg
ctgcgcgagctcggcttcgcgacgccgcagaccgcgcacggcaacgtcgaggacgtcgtg
aagctctaccggcggtactcgagcgagctccgcgcgggcctcgactacgagatcgacggg
ctcgtcgtgtacgtggactcgctccactttcagggcctgctcggcgacgtcaaccggcgg
ccgcgcggcgccgtcgccttcaagttcgcgtcgcccgcgaaggtgacgacggtcgtggcg
atccagtgggacaccgggccgagcgggcgcgtcaccccggtggcgatcgtcgagccggtg
gagctcgccggcgccaacgtccggcgcgcgtcgctgcacaacgcggccaacgtgcggagc
ctcggcatcggggtgggcgacgaggtgctggtctcgcgccgcaacgacgtgatcccgtac
gtcgaggaggtcgtcgagaagcgcgggcccgccgcggtccccccgtcggtctgcccggtc
tgcagcgcgccgctcgtcgtcgagggcgagtacctcctctgccggaacgccgcgtgccga
gccctcatcgaggggcgcatccacaactggatcgacgccatcggcgcgctcgagtggggc
gacaagctgatcgagcaggtggtggccgcgggcctcgtgcgagagccgctcgacctctac
aagctcacggtcaaggacatcgccgagctcgaccggcggggcgagaagagcgccacgaag
tgcctcgaccagctgaagagccggctgccgctcacgctgccgatcttcctcgccgcgctc
ggcatcgaggggttcgcgatccagaccgcgcggctgctcgtgtccgccgggtacaccacg
atcgagaagctgctcgcggccggcgaggacgagctcgccggcatcccggggctcggcgcc
atcaaggccgcgagcatcgtccgcgggctgcgcgcccgcagcgacgagatcgcgcggctg
ctcgccgccggcatcgagccggtcgcccccgaggccgagggtccgctcgccggcctcacg
ttctgcttcaccggcgcggccacgcgctcccgcggcgagctcacccacctcgtcgagtcg
aacggcggccgggtgctgaacagcgtcacgaaggagctcaactacctcgtcctcgccgac
gtggcgtccgcgtcgagcaaggcggtgaaggcgcggaagtacggcaccaagctcatcacc
gaggacgacctcgacaagctcatcgccgagcgccgcggcggctga
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