Streptococcus oriscaviae: INT76_02605
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Entry
INT76_02605 CDS
T08170
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sos
Streptococcus oriscaviae
Pathway
sos03030
DNA replication
sos03410
Base excision repair
sos03420
Nucleotide excision repair
sos03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
INT76_02605 (ligA)
03410 Base excision repair
INT76_02605 (ligA)
03420 Nucleotide excision repair
INT76_02605 (ligA)
03430 Mismatch repair
INT76_02605 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sos03032
]
INT76_02605 (ligA)
03400 DNA repair and recombination proteins [BR:
sos03400
]
INT76_02605 (ligA)
Enzymes [BR:
sos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
INT76_02605 (ligA)
DNA replication proteins [BR:
sos03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
INT76_02605 (ligA)
DNA repair and recombination proteins [BR:
sos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
INT76_02605 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
INT76_02605 (ligA)
MMR (mismatch excision repair)
DNA ligase
INT76_02605 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
INT76_02605 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
DUF4796_N
HAUS5
Motif
Other DBs
NCBI-ProteinID:
QUE54795
LinkDB
All DBs
Position
complement(526831..528789)
Genome browser
AA seq
652 aa
AA seq
DB search
MKTRMNELVELLNQYADAYYHMDAPQVSDATYDKLYRELVTLETAHPEWVLANSPTHRVG
GKILDGFEKYRHEYPLFSLQDAFSRQELEAFDQRVRKEFPKASYICELKIDGLSISLTYQ
AGTLVVGATRGDGNIGENITENLKRVSDIPLTLPVPVDITVRGECYMPKASFERVNTLRQ
EAGEAEFANPRNAAAGTLRQLDTGVVAKRGLASFLYQEASPTEANTQSAVLEKLDNLGFV
TNHDYHLADSIDDVWSFIERMAERRDSLPYEIDGIVIKVNDLAVQEEMGFTVKAPRWAIA
YKFPAEEKEAQILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVIVYKAGDIIPAVLSVVEKKRTTQEAMSIPELCPSCGSHLQHYEDEVALRCINPLCPS
QLMNRLEHFASRDAMNIAGLGGSIVEKLFSADLVHDVADIYKLTPTAIQTLEGFKEKSAE
KLYQAIQASKENSAERLLFGLGIRHVGSKASKILMEAFKDLESLAVADQEAIASLEGLGQ
VIAKSLTSYFASRGTKTLLAELKEAGVNLTYLGQVARDDAALSGLTVVLTGKLERMKRSE
AKAKLESLGANVAGSVSKKTDLVVVGADAGSKLTKAQELGIEIKDEAWLENL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgagaatgaatgaattagttgagttgctcaaccagtatgctgacgcttattat
cacatggatgcccctcaggtttcagacgctacttatgacaaactgtatcgtgagttggtg
accctagaaactgctcatccggaatgggtgcttgccaacagtccaacccatcgtgtgggg
ggcaaaatcttggatggttttgagaaatatcgccatgagtatccgctttttagtttgcag
gatgctttttcacgtcaggagttggaagcctttgatcagcgagtgcgcaaggagtttcct
aaggccagctatatttgtgagctcaagatagatggactatctatttccctgacctatcaa
gctggaacattggtggtaggagctactcggggagatggcaatattggtgaaaacatcacc
gagaatctcaagcgggtatcagacatccccttgacgctaccagtcccagtggacattact
gtccgcggggagtgttatatgcccaaagcctcctttgaacgggtcaataccctgcgtcaa
gaagctggggaggcggaatttgctaacccccgcaatgcggcagcaggtaccctgcgtcag
ctggatacaggcgtagtagccaagcgcggtctggcaagttttctctaccaagaagccagt
ccaacagaagctaacacccagtctgctgtcttggaaaaattggataatctgggctttgta
accaaccacgactaccatttggcagatagcatcgatgatgtctggtcttttattgaaaga
atggcagagcgcagagatagcttgccctatgaaattgatggcatcgttattaaagtcaat
gacctagctgttcaagaagaaatgggcttcacagtcaaggcaccacgctgggccattgcc
tataagtttccagcagaagaaaaagaggctcagattctttctgttgattggacagttggc
cgaacaggcgtggtgacgccaaccgctaatttgactccagtgcaattagcagggaccacc
gtcagtcgagcaactctgcacaatgtggattacatcgcagaaaaagacatccgtatcgga
gatacagttatcgtctacaaggcgggagacattattccggcagtcttatctgttgtagag
aaaaaacgaaccactcaagaagctatgtcgataccagaactctgtccaagttgtggcagt
cacctacagcattacgaagacgaagttgccttgcgttgtatcaatcctctttgtccttct
cagttgatgaatcgtctggaacattttgccagtcgtgatgctatgaatattgctggtctc
ggaggctcgattgtcgaaaaattattctctgcagatttggttcacgatgtggcggacatt
tataaactaacccctacggctatccagaccctcgaaggcttcaaggaaaaatcggctgag
aaactctatcaggctattcaagcctccaaggaaaattcagcggaacggctcctgtttggc
ctaggcattcgtcacgtcggcagtaaggccagcaagattttgatggaggctttcaaggac
ttggagagtctagcggtagctgaccaagaagccattgcctctcttgaaggtctagggcaa
gtcattgcaaaatccttgaccagttattttgccagccgcggaaccaagacacttttagct
gaacttaaggaagcaggagtaaacttaacctatctaggacaagtggcgcgtgatgatgca
gctctttctggcttgacggttgtactgacaggtaaattagagcgcatgaaacgcagtgaa
gccaaggccaaattagaaagtttgggagccaacgttgcagggtctgtttcaaagaaaacc
gatttggttgtcgtaggagcagatgccggcagcaagctaaccaaagcccaagaattggga
attgagattaaggatgaggcttggctagaaaatctataa
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