Solanum tuberosum (potato): 102589975
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Entry
102589975 CDS
T02981
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
sot
Solanum tuberosum (potato)
Pathway
sot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102589975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sot03019
]
102589975
Messenger RNA biogenesis [BR:
sot03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102589975
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_23
AAA_29
AAA_15
Arf
AAA
Zeta_toxin
ORC-CDC6-like
AAA_30
AAA_28
Motif
Other DBs
NCBI-GeneID:
102589975
NCBI-ProteinID:
XP_006344794
UniProt:
M0ZSN6
LinkDB
All DBs
Position
Un
AA seq
329 aa
AA seq
DB search
MAVKEDKKPSVEINNLKFTYPGIDGHPPPGSTPLIDDFNLTLYPGDRCLLVGSNGAGKTT
ILKILGGKHMVEPDMVRVLGRSAFHDTALTASGDLSYLGGEWRREVAFAGFEVPIQMDVS
AEKMIFGVPGTDPQRRDELIKVLGIDLSWRMHRSSDGQRRRVQICMGLLKPFKVLLLDEI
TVDLDVLARSDLLKFLIKECEERGATIIYATHIFDGLENWPSHLIYVAHGKLQLAMPMDK
VKQISNLSLMRTVERWLRKERDEERKRRKERKAKGLPEYEKQVEGTRVVGGDPGRAAGRP
LNNGWAGGTLHSTIAGEENFFLSSNRVLR
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggccgtaaaggaagacaaaaagccatcagtagagatcaacaatctcaaattcacctac
cctggtatcgatggacatccgcctcccggatctacccctttgatagatgatttcaacctt
accctttatcccggtgatcgatgccttcttgtcggatctaatggcgcagggaagactaca
attctgaagatattgggaggaaagcatatggtagaaccagacatggtcagagtgcttgga
agatctgcatttcatgacactgctttaacggcttctggagacctcagttatcttggtgga
gagtggaggagagaagttgcatttgctggatttgaggtgcctatccaaatggatgtttct
gctgagaaaatgatttttggggttccaggaactgatccacaaagacgagatgaactaatt
aaggttcttggtatcgatctgtcctggagaatgcacagatcatctgatgggcaaagaaga
agagtgcagatatgtatgggtcttctgaaaccattcaaggtactacttctcgatgagata
acagttgatctggatgttcttgcaaggtctgatcttttgaaatttctgatcaaagaatgt
gaagagcgaggcgctacaataatttatgcaacacacatttttgatggtcttgagaactgg
ccttctcatttaatatatgtggctcatgggaagctgcaattagcaatgccaatggacaag
gtgaagcagatcagcaatttatcactaatgaggacagtagagagatggctgaggaaagaa
agagacgaggagaggaaacgaaggaaagagaggaaggcaaagggccttccggaatatgaa
aaacaagttgaaggcactcgagtggtagggggagatccaggtcgtgctgctggtcgtcca
ttaaacaatggttgggctggtggaacactacattctactattgctggcgaagaaaatttt
ttcttaagctcaaaccgtgttctaagataa
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