Solanum tuberosum (potato): 102597176
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Entry
102597176 CDS
T02981
Name
(RefSeq) ATP-dependent helicase rhp16-like
KO
K15083
DNA repair protein RAD16
Organism
sot
Solanum tuberosum (potato)
Brite
KEGG Orthology (KO) [BR:
sot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sot03400
]
102597176
DNA repair and recombination proteins [BR:
sot03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
102597176
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
102597176
NCBI-ProteinID:
XP_006363761
LinkDB
All DBs
Position
Un
AA seq
704 aa
AA seq
DB search
MDPSISEDQKTIASDGSGLLYVKFERHCLMERLLVRVKKREKKQKKRPALTWEEWEEEND
TCLLENYSDDLDLDILNVSLSETAEPPSDLLSPLLKYQKEWLAWSLKQEESTFKGGILAD
EMGMGKTVQAIALVLAQRELKKHSSILSSSPSASQELPTVKGTLIVCPVIGVMQWFCEIE
RCTTKGSNKTLVYHGANREKCTYKLEEYDFVITTYYTIEADYRTKKSKHNSKNSKPRVEI
MDQKTDSTEKLSDDGSVDISSSVGEDVSRRRSFLHSVKWDRIILDEASQTLCCMILYFLP
DLAHYLKDADCNTARAVLALESSYKWALTGIPLQNRMNELYSIVRFLQAKPYAYHFCKDC
DCKALDYSFSTKCAQCHHKPARHFLWWNRYIAKPLESIQSNATGRDAMVLLKHKILKNLL
LKRTKKERAADLALPLKTVTLRIDSLDVNEKAYNQQLLEETIAKLEKYPRDGTLRKNYRS
INTRLQKAVDHPFLVEHNVEKGVSNSEPTVKGFRSSSILNKIHLNDFRTSTKIEALREEI
MFMFERDGSAKGIVFSQFTPFLDLIQYSLQKSDIKCVQLVGSTSVSARYAAVTRFTEDPD
CRILLTSFKAGGVALDLTVASHVFLMDPCLNPDAEQQAQDRVHRIGQHKPVRIVRFIIKD
TIEETILESQEKKKYLQRMISHSFEAWNKLAFEEWQWLFERDFL
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggatccttcaatttcagaagaccaaaagactatagcttcagatggtagtggtcttctc
tatgtgaagtttgagaggcattgtttgatggaaaggcttctagttagggtgaaaaaacgt
gagaagaaacaaaagaaaaggccagctttgacgtgggaagaatgggaagaagaaaatgat
acatgccttcttgagaattattcagatgatttagacttggatattctgaacgtgtctctt
tctgaaactgccgagccaccatcagatttgctctcgccactgttgaagtaccaaaaagag
tggctggcttggtcattaaagcaagaagaatctacattcaaaggaggtattcttgctgat
gaaatgggaatggggaagacggttcaagccatagcacttgtgcttgctcaacgcgaatta
aagaaacattccagtatattgtcgtcttcacccagtgcttcccaggaactcccaacagta
aaaggaactcttattgtatgtcctgtgattggagtaatgcaatggttttgcgagattgaa
cgttgcaccactaaaggtagcaacaaaacccttgtttatcatggcgccaacagggagaaa
tgtacatacaaactggaggaatatgattttgtcattactacatactacactattgaggct
gactataggacaaaaaagtcaaagcataacagcaagaactcaaaacctcgggtagaaata
atggaccagaaaacagattctacagaaaaattgagtgatgatggttctgttgatatttca
tccagtgttggtgaagatgtgtctaggagaaggtcatttttgcattcagtgaagtgggat
cgcatcattttggatgaggcaagtcaaacattatgctgcatgatattgtactttctgcct
gatctagctcattatctaaaggatgcggactgcaacacggcaagagctgttcttgcttta
gaatcttcatacaaatgggccttaactggtatacccctgcagaaccgtatgaatgaattg
tactcaattgttcgtttcttacaagctaagccttacgcttatcacttttgcaaagattgt
gattgcaaagcacttgattatagcttctcaactaagtgtgcacagtgccaccacaaacct
gcacgccactttctctggtggaatagatatattgcaaaacctttagaatcaattcaatcc
aatgcgactggtagagatgcgatggttttgttgaagcacaaaattctgaaaaatctattg
ctaaaacgtaccaaaaaggagagagctgctgatcttgcacttcccctgaaaactgttact
ctgagaatagattctttggatgtgaatgaaaaggcctacaaccaacaactgttagaagaa
accattgcaaagttggagaaatatcctagggatggaactctgagaaagaactatcgctct
ataaatacacgcctacagaaggcagttgatcatcctttccttgtggaacataacgtggaa
aaaggagtttctaattctgaacctactgtcaaaggttttagatcctcaagtatattgaac
aagattcacctcaatgatttccggacaagcactaaaatagaagctctgagagaagaaatt
atgttcatgtttgaaagagatggctctgcaaaaggaatagttttcagccagtttacacca
tttttggatctgatacaatattctcttcagaagtcggacatcaaatgtgttcaattagtt
ggatccacatctgtttctgcaagatatgcagcagttaccagatttactgaggatccagat
tgcaggatattgcttacgagcttcaaagctggaggtgttgccctcgatcttacagttgca
tcacatgttttcttgatggatccctgcttgaatcctgatgcagagcagcaagcacaagat
agagttcatcgaatagggcaacataaaccagtcaggattgtgagatttattatcaaggat
acaatagaagaaacgatcttagagtcgcaagagaagaagaaatatcttcaaaggatgatc
agtcattcttttgaggcttggaacaaactggcattcgaggagtggcaatggttatttgag
agagattttctttag
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