KEGG   Solanum tuberosum (potato): 102603437
Entry
102603437         CDS       T02981                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
sot  Solanum tuberosum (potato)
Pathway
sot03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    102603437
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sot03021]
    102603437
Enzymes [BR:sot01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     102603437
Transcription machinery [BR:sot03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     102603437
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1 DUF2225
Other DBs
NCBI-GeneID: 102603437
NCBI-ProteinID: XP_006358858
LinkDB
Position
Un
AA seq 1446 aa
MEHDRNIEQQVPEGILTGINFSILSETDAAKLSAKVIGAVNEVTDPALGFPNPIFQCTTC
GANDGKKCEGHFGLVNFPYTILNPYFVSEVAQILKKICPGCKSVRRDKVKGSDRTSACKY
CDGVLRGYPPTKFKVSPKDMFGRTAIIAEVNENLLKKVQQTTGVSLASDYWDFIPYDAQQ
EASVNSSNYKRVLSHAQVYSILKDIDPGFLEGLLKRKNSIFLKSCLLTPNSHRVTEFGQH
MIFDESNRLYRKLIDFRGTANDLSMCVLDRIKVSKIRADRSVINDPNAPATGLKYVKELV
LAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAESLSLRNWERMTDLCDLMILQRG
GILVRRNGVLVRISVMDRLQNGDIIHRPLIDGDVVMINRPPSIHQHSLIALSVRILPINS
VLSINPLVCSPFRGDFDGDCLHGYIPQSIDSRIELSELVALKQQLLDGQNGQNLLSLSHD
SLTAAHLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNLCYWTGKQLFSLLLPSD
LEYVFPSNGVCISEGEIVTSSGGSSWLRDVSDNLFYSLVKHHGGDTLDLLYAAQTVLCEW
LSMRGLSVSLSDLYISSDSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGSLEE
SKNSMGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSK
GNLLKLVQHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPS
AVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNA
YGNQIVQFSYYEAEKIASTKGTGDALESHNHAIGGHPVGSLAACAISEAAYSALDQPVSA
LESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEV
VSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSILDALNMRYRAATTKGGND
LPNLHITCKDCSVAEARKEKSEICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFS
AFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWER
SYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATGEFVPLSA
KGLTLQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIGTGSS
FDIIYSGKGYEPAEPIDVYTLLQNHVTSGTPKVKVTLDEDGGMDGKSLARRLDRLDDLNK
KSCKSEWSITKLRSFISFNDIKKLSQSLKQMLSKYAIDRELNEADKCIAMMALQFHPRRN
EKIGKGAPQEIKIGYHKEYEDSRCFMLVRSDGSVEDFSYRKCMQHALELIAPQKAKTSRW
LNRASA
NT seq 4341 nt   +upstreamnt  +downstreamnt
atggagcatgatcggaatattgagcagcaagtgccagaaggtattctgacgggcataaat
ttcagtatcttgtcagagactgatgcagccaaattatcagctaaggtaattggagcagtt
aatgaagtaacagatcccgcattggggtttccaaatccaatctttcagtgtacaacatgt
ggtgcaaacgatgggaaaaaatgtgaaggtcattttggattggtaaactttccatataca
attctgaatccgtatttcgtatcggaggttgctcagatcttgaagaaaatatgtccagga
tgtaaatctgtgcgtcgtgataaggtcaagggttctgataggacatctgcctgcaaatac
tgtgatggagttttaagaggttatccgccaacaaagtttaaagtatctcctaaagacatg
tttgggaggactgccattatcgcagaagtgaatgagaatttgttaaagaaggttcagcaa
actacgggagtaagtttggcttctgactattgggatttcatcccatatgatgcacaacaa
gaagcaagtgtaaattcgtcaaattacaaaagagttttatcacatgctcaggtatatagc
attctgaaagatattgatccagggtttcttgaaggacttctcaaaaggaagaattcaatc
ttccttaaaagctgccttttgactcctaatagtcatcgtgtcacagaatttgggcagcac
atgatatttgatgaaagtaataggctttaccgaaagttgatcgactttagagggacagca
aatgacttgagcatgtgcgttttagatagaattaaagtttccaagatacgtgcagataga
tcggtaatcaatgatcctaatgcccctgctactggtttgaagtatgtgaaagaattggtt
ctggcaaaacgcactaatcatgctttccgcatggttgtggttggtgatcctaacatagag
ctaggtgaaattggtattccatgtcatgttgctgagaatctccacatggcagaatctcta
agtttacgaaattgggaaaggatgactgatctctgtgatcttatgattcttcagagggga
gggattcttgtccgtagaaatggtgtcttagttcgtattagtgtaatggaccggttgcag
aacggggatattatacatagaccccttatcgatggagatgttgtgatgataaatcgacct
ccgtctattcatcaacactcgctaattgctctgtctgttaggattcttccaataaattct
gttctttcaatcaatccccttgtctgttctccattccgtggggattttgatggtgattgc
cttcatggttatattccccaatcaatcgattctaggattgagcttagtgagcttgttgct
ctgaaacagcagttgcttgacggacagaatggtcaaaatcttctttcattaagtcatgat
agcttaactgctgctcatttaattttggaacctggagttttcttggaccgcttccagatg
cagcagctacaaatgttttgtccacgtcaattggggatgactgctatcgtaaaagcacca
ccaggaaacttgtgttattggactggcaaacagttattcagcttgcttttgccatcagac
cttgagtatgtttttccatcaaatggtgtctgtattagtgagggggaaattgtgacatct
tctggtgggtcttcttggctgcgtgatgtcagtgataatcttttttatagtctggttaaa
caccatggaggtgatactcttgacctcctttatgctgcacaaacagttctttgtgagtgg
ttgtcaatgagaggccttagtgtttcgttgtccgatctttacatatcttctgattcatat
tcccgcgaaaatatgattgatgaagtctgttctggtttgcaagaggcagaacggttatct
tacatccagcttctgatgataaagtataataaggatttcctttctggaagcttagaagaa
agcaagaactccatgggttttgattttgagtttatgtccatcatgcagcagaaatcagct
tctcttagtcaagcttctgctagtgctttcaagaaagttttccgggatatccagaatttg
gtatataattatgcaagcaatgacaattcattactggctatgttaaaagctgggagtaag
ggaaacctgctaaaactggtccaacacagtatgtgtcttggtttgcagcagtctttggtt
ccagtatcatttagaatgccccgtcaactttcttgtgatgcatggaacaatcataaatca
catcttgttattgagaaaccacataaggttcctgaatgtcctggttcttacatcccatct
gctgtggttaaaagttcatttcttgcgggtttgaatcctctagagtgttttgtgcattca
ttaaccacccgtgatagttcttttagtggacatgctgatgtttctggaactttgaaccgc
aagcttatgtttttcatgcgtgatctgtacgttggatatgatggaacagtgagaaatgct
tatgggaatcaaattgtgcagttctcttactacgaagcagagaaaattgcttctactaag
ggcactggtgatgccctagaaagtcataaccatgcaattggtggtcatcctgttggttca
ttggcagcctgtgccatttcagaagctgcatacagtgctttggatcaacctgtcagtgca
cttgagtcatcacctttactaaacctgaagaaaatattggaatctggagcggggagtcgt
agtggcgagaaaactgcatcaatgtttctttcaaaaagacttggcagatgggctcatggt
tttgaatatggagctttagaggtcaagggtcatctggaaaggcttcttctttcagaagtt
gtttctacagtaatgatatgcttctcccccgaaacacgtaaaagcactcacaattgtccc
tgggtctgtcattttcatatagataaggaaaatgtgaagacgagaaggctgaagctgaga
tcaattttagatgctcttaatatgagatatagagccgcaacaacgaaaggtgggaatgat
cttccaaatctgcatataacgtgcaaggattgttcagttgctgaagcacgaaaagagaag
tccgaaatttgcatcactgtttctgtggttgagacctcaaaagatccttcttcacttctg
gatacacttcgtgatgtggtgattccattccttcttgagacggtgataaaaggtttctcc
gcatttaaaaaggttgatatcttatggaaagagttgccaagcccatcaaaatcttccagg
ggctctaccggggaactatatttgcaggtcttcatgtcagaaagttgtgacagaatcaaa
ttctggaatgcgcttgtggatagttgcctccagataagggatttgattgattgggaacgc
agttatcctgatgatgtccatgatctgactgtagcctatggaattgatgtagcatgggag
tactttctatgtaaactacattcagctgtctctgaaactggcaagaaaatccttcccgaa
cacttggtacttgcagcagatagtctcacagctacaggagaatttgttcccttgagtgcc
aaagggctgacactgcaaagaaaggctgctggtgttatttcaccatttatgcaagcgtgc
ttttcgaatccaggggactcgtttgttagggctgccaagatgggattaagtgacaatctt
caagggagtcttgaatcattggcatggggaaagactccttccataggaactggttcttca
tttgacattatctactctggaaagggatatgagcctgctgaaccgatagatgtgtatact
ctgctgcaaaaccatgtcacatcgggtacgccaaaggtgaaggtcactcttgatgaagac
ggtggaatggatggaaagtctcttgcacgacgtcttgataggcttgatgatctcaataaa
aagagttgtaaaagcgagtggtcaattacaaagctgagaagtttcatttcattcaacgac
ataaaaaagctctctcagtcattgaagcaaatgttgtccaaatatgctatcgatcgcgag
ttgaatgaagcagacaagtgcatagcaatgatggcattacaatttcatcctcgaaggaat
gagaagattggaaaaggagcaccacaggaaattaagattggttaccacaaagagtatgaa
gattcccgctgctttatgttggtgcgttcagatggatcagttgaagacttctcgtatcgc
aagtgtatgcaacatgctctggaactgattgctcctcaaaaggcaaaaacctctagatgg
ttgaatagagcatcagcctaa

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