Stenotrophomonas oahuensis: PDM29_04170
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Entry
PDM29_04170 CDS
T10110
Symbol
smeD
Name
(GenBank) multidrug efflux RND transporter periplasmic adaptor subunit SmeD
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
sou Stenotrophomonas oahuensis
Pathway
sou01501
beta-Lactam resistance
sou01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
sou00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
PDM29_04170 (smeD)
01503 Cationic antimicrobial peptide (CAMP) resistance
PDM29_04170 (smeD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sou03036
]
PDM29_04170 (smeD)
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sou02000
]
PDM29_04170 (smeD)
01504 Antimicrobial resistance genes [BR:
sou01504
]
PDM29_04170 (smeD)
Chromosome and associated proteins [BR:
sou03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
PDM29_04170 (smeD)
Transporters [BR:
sou02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
PDM29_04170 (smeD)
Antimicrobial resistance genes [BR:
sou01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
PDM29_04170 (smeD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HlyD_3
HlyD_D23
Biotin_lipoyl_2
CusB_dom_1
Motif
Other DBs
NCBI-ProteinID:
WNH53484
LinkDB
All DBs
Position
complement(953140..954309)
Genome browser
AA seq
389 aa
AA seq
DB search
MSSTRYRYVALSLAVALSLSACGGGEQEGQQGGPGQVTVATLKSEQVGLTRELPGRTNAF
LVAEVRPQVSGIVAKRLFTEGGLVTAGQPLYQIDDASYRAQANSARAQLVRAEATANAAR
LSAKRITELAKVDAVSQQDLENAVAAQKQADADVGAAKASLDAANVTLGYARITAPIAGR
IGKSSVTQGALVSAGQADALATVQQLDPIYVDLTQSAAELLELRRELAAGRLKDNQTLPV
TILLEDGSEFSHKGTLEFSEVSVDPSTGSYALRVKVDNPDQVLMPGMYVRAVVGSGVREN
ALLVPMQGIARDAKGDTTAMVVGKDNKVEVRPVKVSRALADKWLVEDGLQPGDKVIVEGL
QKIQPGMPVQATEKGAAPAAPAAAAAGKQ
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccacccgttatcgttacgtcgcgctgtccctggcggtcgccctgagtctgtcc
gcctgtggcggcggtgagcaggaaggccagcagggcggccccggccaggtcaccgttgcc
accctcaagagcgagcaggtcggcctgacccgcgaactgcccggccgcaccaacgccttc
ctggtcgccgaagtgcgcccccaggtcagcggtatcgtggccaagcgcctgttcaccgaa
ggcggcctggtcacggccggccagcccctgtaccagatcgatgacgccagctaccgcgcc
caggccaacagcgcccgcgcccagttggtccgtgccgaggccaccgccaacgccgcgcgc
ctgagcgccaagcgcatcaccgagctggccaaggtcgatgcggtcagccagcaggacctg
gaaaacgccgtcgccgcgcagaagcaggccgacgctgacgtcggtgctgccaaggcctcg
ctggacgccgccaatgtcaccctcggctatgcccggatcaccgcgccgatcgccggccgc
atcggcaagtccagtgtcacccagggcgcgctggtcagcgccggtcaggctgacgcgctg
gccactgtgcagcagctcgatccgatctacgtcgacctgacccagtccgccgccgaactg
ctggaactgcgccgtgagctggccgccggtcgcctcaaggacaaccagaccctgccggtg
accatcctgctcgaagacggcagcgagttctcgcacaagggcacgctggagttctccgaa
gtcagcgttgatcccagcaccggcagctacgcgctgcgggtgaaggtcgacaaccccgac
caggtgctgatgccgggcatgtacgtgcgtgccgtggtcggcagtggcgtgcgtgaaaac
gcgctgctggtgccgatgcagggcattgcccgcgatgccaagggcgacaccaccgccatg
gtggtcggcaaggacaacaaggtggaagtccgcccggtcaaggtcagccgtgcactggcc
gacaagtggctggtcgaagacggcctgcagccaggcgacaaggtcatcgtcgaaggcctg
cagaagatccagccgggcatgcccgtgcaggccaccgagaagggcgcagctccggctgcg
ccggcagctgccgccgccggcaagcagtaa
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