Stenotrophomonas oahuensis: PDM29_20025
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Entry
PDM29_20025 CDS
T10110
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sou Stenotrophomonas oahuensis
Pathway
sou03030
DNA replication
sou03410
Base excision repair
sou03420
Nucleotide excision repair
sou03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PDM29_20025 (ligA)
03410 Base excision repair
PDM29_20025 (ligA)
03420 Nucleotide excision repair
PDM29_20025 (ligA)
03430 Mismatch repair
PDM29_20025 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sou03032
]
PDM29_20025 (ligA)
03400 DNA repair and recombination proteins [BR:
sou03400
]
PDM29_20025 (ligA)
Enzymes [BR:
sou01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PDM29_20025 (ligA)
DNA replication proteins [BR:
sou03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PDM29_20025 (ligA)
DNA repair and recombination proteins [BR:
sou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PDM29_20025 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PDM29_20025 (ligA)
MMR (mismatch excision repair)
DNA ligase
PDM29_20025 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PDM29_20025 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
DUF7501
DUF2116
Motif
Other DBs
NCBI-ProteinID:
WNH52577
LinkDB
All DBs
Position
complement(4479541..4482003)
Genome browser
AA seq
820 aa
AA seq
DB search
MSPSPAERAQDLRRQIDEAGKAYYERDEQLIPDAEYDVLVRELEALEQAHPELAATDSPT
QRVGGKASSRFAEVRHAVPMLSLGNAFSDEEVDDFVRRIRERLRRDALLFSAEPKMDGLA
ISLRYENGQFVQGATRGDGSTGEDVTANLRQIKVIPAQLQGEGWPDVLEVRGEVYMARAD
FEAYNANARLHGGKVLANPRNGAAGSLRQLDPKISAQRKLSFYAYGLGEVSGGELPPTHS
GTLAQLKAWGFPVSDLCQVVEGRDGLLAYYRDIGARRDGLAFDIDGVVYKLDDRAGQEQM
GFVSRAPRWAIAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLKPVAVAGVVVANATLHN
ADQIKRLDVRVGDTVIVRRAGDVIPEVVSIIPDRRPEGTTAWQMPTHCPVCGSEIVQEEG
AAVWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGGKYIETLVDAGIVRGVADLYRLTRD
QLLHLKLVLDAESPQALADQIGVHLPREGSGDYLRRVLALDAADEGWRAQALAMATDFEW
NTKKIATKWADNLIAAIDTSRTTTLERLLFALGIEHVGESTAKALAVWFGDLELIRHLPW
PLFKRVPDIGGEVARSLGHFFEQKGNQDAIDALINIGNVRISDTHPPSARLRDGLDFAQL
LVEAEIPGITRLRAEKLTATLPDAQSLLDAEPVQLTAAGLPNEVALGLNAWLETNGQGAM
LVEADAQRRALLEKAPELADIVAGPLDGQTVVLTGTLAQMSRDVAKERLEALGAKVSGSV
SKKTSFVVAGTEAGSKLTKATELGIDVWDEDRLVAFLARE
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgagccccagccccgccgaacgtgcccaggacctgcgtcgccagatcgatgaggccggc
aaggcctactacgagcgcgacgagcagctgattcccgacgccgaatacgacgtactggtc
cgcgaactggaggcattggagcaggcacaccccgagctggcggccaccgattcgccgacc
cagcgggtgggcggcaaggcctcgtcgcggtttgccgaagtgcgccacgcggtgccgatg
ctgtcgctgggcaatgcgttcagcgacgaggaggtggacgatttcgtgcgccgcatccgc
gagcgcctgcgccgcgatgcgctgctgttctcggccgagcccaagatggatggcctcgcg
atcagcctgcgctatgagaacggccagttcgtgcagggggccacacgtggcgacggcagc
accggtgaggacgtgaccgccaatctgcgtcagatcaaggtcattccagcccagctgcag
ggcgagggctggcccgacgtgctggaagtacgcggcgaggtctacatggcccgcgccgat
ttcgaggcctacaacgctaacgcccgcctgcacggcggcaaggtgctggccaatccgcgc
aatggtgccgccggttcgctgcgccagctggacccgaagatcagcgcgcagcgcaaactg
agtttctacgcttacgggctgggtgaggtcagtggcggcgaactgccgcccacccattcc
ggcactctggcccagctcaaggcctggggtttcccggtcagcgacctgtgccaggtggtg
gagggccgcgacggtctgctggcttactaccgcgacatcggcgcgcgccgtgacggcctg
gccttcgacatcgacggcgtggtttacaagctggacgatcgcgccggccaggaacagatg
ggctttgtctcgcgcgcgccgcgctgggccatcgcgcacaagttcccggcccaggaacag
accaccacggtggaagcgattgaaatccagatcggccgtaccggtgcggccacgccagtg
gcgcggctgaagccggtggcggtggccggggtggtggtggccaatgccaccctgcacaac
gccgaccagatcaagcgtctggatgtgcgtgtgggcgacacggtgatcgttcgccgcgcc
ggcgacgtgattcccgaagtggtgagcatcattcccgaccgtcgcccggaaggcacgacg
gcctggcagatgccgacgcactgcccggtgtgtggctcggaaatcgtgcaggaagagggc
gcggcggtgtggcgctgctcgggtgaactgagctgcccggcgcagcgcaaggaagccatt
gcccactttgcctcgcgccgcgcgatggacatcgacggcctgggcgggaagtacattgaa
accctggttgatgccggcatcgtgcgcggcgtggccgacctgtaccgcctgacccgcgac
cagctgctgcacctgaagctggtgctggacgccgagtcgccgcaggcgctggccgaccag
atcggtgtgcacctgccgcgcgaaggcagtggtgactatctgcgccgtgtgcttgccctg
gacgccgccgatgaaggctggcgcgcgcaggcgctggccatggcgaccgacttcgagtgg
aacacgaagaaaatcgccaccaagtgggccgacaacctgatcgccgccatcgataccagc
cgcaccaccacgctcgagcgtctgttgttcgcactgggcattgaacacgtgggcgaaagc
accgcgaaggcactggcggtgtggttcggcgatctcgagctgatccgccatctgccatgg
ccgctgttcaagcgcgtgccggacatcggcggtgaggtggcgcgttcgctggggcacttc
ttcgagcagaagggcaaccaggacgccatcgacgcactgatcaacatcggcaacgtacgc
atcagcgacacccatccgcccagcgccagactgcgcgacggtctggatttcgcgcagctg
ctggtggaggccgagattcccggcatcacccgcctgcgtgcggaaaaactgaccgccacg
ctgcccgacgcgcaatcgctgctggatgccgagccggtacagctgactgccgccggcctg
cccaatgaagtcgcgctggggctgaatgcctggctggagacgaacgggcagggcgcgatg
ctggtagaagccgatgcgcagcgccgtgcattgctggaaaaagcaccggaactggcggat
atcgtggccggtccgctcgacggccagaccgtggtgctgaccggcacgctggcacagatg
agccgcgacgtggccaaggaacgtctcgaagcgctgggggccaaggtgtccggcagcgtg
tcaaagaagacgtcattcgtggtggccggtacggaagccggttccaaactgaccaaggcc
accgagctgggcatcgatgtctgggacgaagatcgtctggtcgcgttccttgcgcgggaa
tga
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