Streptomyces olivoreticuli: QZH56_09015
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Entry
QZH56_09015 CDS
T09517
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sov
Streptomyces olivoreticuli
Pathway
sov03030
DNA replication
sov03410
Base excision repair
sov03420
Nucleotide excision repair
sov03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QZH56_09015 (ligA)
03410 Base excision repair
QZH56_09015 (ligA)
03420 Nucleotide excision repair
QZH56_09015 (ligA)
03430 Mismatch repair
QZH56_09015 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sov03032
]
QZH56_09015 (ligA)
03400 DNA repair and recombination proteins [BR:
sov03400
]
QZH56_09015 (ligA)
Enzymes [BR:
sov01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QZH56_09015 (ligA)
DNA replication proteins [BR:
sov03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QZH56_09015 (ligA)
DNA repair and recombination proteins [BR:
sov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QZH56_09015 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QZH56_09015 (ligA)
MMR (mismatch excision repair)
DNA ligase
QZH56_09015 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QZH56_09015 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
HHH_8
Motif
Other DBs
NCBI-ProteinID:
WKK25712
LinkDB
All DBs
Position
complement(2256710..2258959)
Genome browser
AA seq
749 aa
AA seq
DB search
MDQREDETVAGGQHGEEQLAAEAALVVAPAEAREQHARLAEQIEEHRFRYYVKDAPVVSD
AEFDRLLRSLEALEERHPALRTPDSPTQKVAGAYETEFTAVEHRERMLSLDNAFDDEELA
AWADRLAKELGEGAAYHFLCELKVDGLAVNLTYEQGRLTRAATRGDGRTGEDITPNVRTI
EEIPDRLQGENVPELVEIRGEVFFPMEKFEELNARLVEAGKPPFANPRNAAAGSLRQKDP
RVTRTRPLHMVVHGIGAREGFDIDRQSQAYELLREWGLPTAAHNKVVDSLEGVREFIAHY
GQPDVRHSMEHEIDGVVVKLDEIPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVDIRVGV
GRTGRVTPYAVVEPVTVAGSEVEFATLHNQDVVKAKGVFIGDTVVLRKAGDVIPEILGPV
ADLRDGSEREFVMPAECPECGSTLQPMKEGDIDLRCPNARACPAQIRERLYYLAGRKCLD
IENFGYVAATALTQPLEPATPPLKDEGDLFDLTIEELLPIKSYVLDMDSGLPKVDPKTGE
PKVVTFFANQKGEPKKNALAMLENIQAAKERPLARFLTGLSIRHMGPVAAEALAREFRSL
DRIAEASEEELKAVDGVGPGTAESVKQWFAEDWHREIVEKWRAAGVRFEDEAAGEEEGPR
PLEGLTVVVTGTLASYTRDGAKEALQSRGAKVTGSVSKKTDFVVVGDNPGSKFDKAMQLK
VPVLEEDGFAVLLERGADAAREAAVPAAE
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggatcaacgggaggacgagacggtggctggcggacagcacggcgaagaacagctcgcg
gcggaggctgcgcttgtcgtggcacccgcggaggcacgggagcagcacgcgcggctcgcc
gagcagatcgaggagcatcgcttccggtactacgtgaaggacgccccggtcgtcagcgac
gccgagttcgaccggctgctgcgctcgctggaggccctggaggagcggcatccggcgctg
cgcacccccgactcgcccacccagaaggtcgcgggggcgtacgagacggagttcactgcc
gtcgagcaccgcgagcgcatgctctccctcgacaacgccttcgacgacgaggagctggcc
gcctgggccgaccgcctcgccaaggagctcggcgagggcgcggcgtaccacttcctgtgc
gagctcaaggtcgacggcctcgccgtcaatctgacgtacgagcagggccggctgacccgc
gccgccacccgcggcgacggccgcaccggcgaggacatcacgcccaacgtgcggaccatc
gaggagatccccgaccggctccagggggagaacgtcccggagctcgtcgagatccgcggc
gaggtcttcttcccgatggagaagttcgaggagctcaacgcccgcctggtggaggcgggc
aagccacccttcgccaatccgcgcaacgcggccgccggttcgctgcgccagaaggacccc
agggtcacccgcacccgcccgctgcacatggtggtgcacggcatcggcgcccgcgagggc
ttcgacatcgaccgccagtcgcaggcgtacgagctgctgcgcgagtggggcctgccgacc
gccgcgcacaacaaggtcgtcgactccctggagggcgtgcgggagttcatcgcgcactac
gggcagcccgacgtccggcactcgatggagcacgagatcgacggcgtcgtcgtcaagctc
gacgagatccccctccaggggcggctcggctccacctcgcgcgcgccgcgctgggccatc
gcgtggaagtacgctcccgaggaggtcaacaccaagctggtggacatccgggtgggcgtc
ggccgcacgggccgggtgacgccgtacgcggtggtggagcccgtcaccgtcgccggctcc
gaggtcgagttcgcgaccctgcacaaccaggacgtcgtcaaggccaagggcgtcttcatc
ggcgacaccgtggtgctgcgcaaggccggcgacgtgatccccgagatcctggggccggtc
gccgatctgcgggacggcagcgagcgggagttcgtgatgcccgccgagtgcccggagtgc
ggcagcaccctccagccgatgaaggagggcgacatcgacctccgctgccccaacgcccgc
gcctgccccgcccagatccgcgagcggctctactacctggccggccgcaagtgcctcgac
atcgagaacttcggctatgtggcggccaccgccctcacccagcccctggagccggccact
ccgccgctgaaggacgagggcgacctcttcgacctgacgatcgaggagctgctgcccatc
aagtcctatgtgctcgacatggattcgggtctgcccaaggtcgatcccaagacgggcgag
ccgaaggtcgtcaccttcttcgcgaatcaaaagggtgagccgaagaagaacgcgctcgcg
atgctggagaacatccaggccgcgaaggagcgcccgctggcccggttcctcaccgggctc
tccatccggcacatgggcccggtcgcggccgaggccctggcccgggagttccgctccctg
gaccggatcgccgaggcgagcgaggaggagctcaaggccgtcgacggcgtcggcccgggc
accgcggagtccgtgaagcagtggttcgccgaggactggcaccgcgagatcgtggagaag
tggcgcgccgcgggcgtccgtttcgaggacgaggcggcgggcgaggaggagggccccagg
ccgctggagggcctcaccgtggtggtcaccggcacgctcgcctcgtacacccgcgacggg
gcgaaggaagcgctccagagccggggggcgaaggtgaccgggtcggtgtccaagaagacg
gacttcgtggtggtgggggacaaccccgggtcgaagttcgacaaggcgatgcagctgaag
gtgccggtgctggaggaggacgggttcgccgtgctcctggagcggggcgccgacgcggcc
cgtgaggcggcggtcccggcggccgagtag
DBGET
integrated database retrieval system
