Sporomusa ovata: SOV_36340
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Entry
SOV_36340 CDS
T10406
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sova Sporomusa ovata
Pathway
sova03030
DNA replication
sova03410
Base excision repair
sova03420
Nucleotide excision repair
sova03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sova00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SOV_36340 (ligA)
03410 Base excision repair
SOV_36340 (ligA)
03420 Nucleotide excision repair
SOV_36340 (ligA)
03430 Mismatch repair
SOV_36340 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sova03032
]
SOV_36340 (ligA)
03400 DNA repair and recombination proteins [BR:
sova03400
]
SOV_36340 (ligA)
Enzymes [BR:
sova01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SOV_36340 (ligA)
DNA replication proteins [BR:
sova03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SOV_36340 (ligA)
DNA repair and recombination proteins [BR:
sova03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SOV_36340 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SOV_36340 (ligA)
MMR (mismatch excision repair)
DNA ligase
SOV_36340 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SOV_36340 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_2
BRCT_2
RNA_ligase
RUBY_RBDX
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WWV72245
LinkDB
All DBs
Position
complement(3720499..3722703)
Genome browser
AA seq
734 aa
AA seq
DB search
MDIGARIKELREKIEYHNKKYYEEDAPEITDFEYDSILRELKNLELEYPELATPESPTKR
VGGKAKRGAKQIAHDVPMLSLDDRFSREEVADFITKIQKEVENPVFIVEHKIDGLSVALR
YRGGEFAEGMTRGDGISYGEDITDNLMMIDTVPLSIPEKLPYLEVRGEVYMDNAAFEAVN
ERQEEIEGKIFANPRNCAAGTLRQLDPGVVAERDLSIFVFNLQAIQGKEFTSHAETLDWL
ATQGFAVPKYITCTTEEGVWDAITLIDETRGELPFGIDGAVVKLDNLADREKLGASSKVP
RWAIAYKYPPEEKATKVLDIEVNVGRTGRLTPLAILEPVRLAGTTVSRASLHNQDQIDRL
DIRIGDTVIVRKAAEIIPEIVRVIKEQRAHGTTPFKIPDRCPVCGAPALRGEDAADIRCS
GINCPAQLARLIIHFASRGAMDIEGLGPAAVHSLMDKGYIKDIADIYYLKNYRDEFIASG
ITPRSRKQVAPYKDGRARKQKEPDYTASTDNLLAAIERSKEQNLERLINGFGIPNIGKQT
GSILEENFPDIQAIAKISYDKYKQLQDSEKQLKKERSKLAKLLKTSTKPEDVELLSEMDK
QLSDIGKELKANGDIKGIGEVSIKAIAAFFAEPQTKVILERLEEAGVTMKSRSAGKVIDD
RLEGATFVLTGTLQTLSRGEATQLIQEHGGRVAGSVSKKTTYLLAGEGAGDKMNKAQSLG
ITIITEAEFLHMIE
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggatattggtgctcgtattaaagagctaagagagaagattgagtaccataataaaaag
tactacgaagaggatgcaccggaaattaccgactttgagtatgattctatactgcgggaa
ttgaagaaccttgagcttgaatacccagagctggcaacaccggaatcgccgacaaagcgg
gtaggtggaaaagccaaacgaggagctaaacagattgcgcacgatgtgccgatgctttcc
ctggatgaccggttctcaagagaagaagtagcagactttattaccaagatacaaaaagaa
gttgaaaaccctgtatttattgtagaacataaaatcgacggtctctctgttgcgctgcgc
tatagaggtggggaatttgcagaaggcatgacccgtggcgatggtataagctatggggaa
gatataacagataatctcatgatgatcgatactgtgcccctaagcattcctgaaaaactt
ccgtatcttgaagtgcgtggtgaagtttatatggataatgctgcattcgaagctgtcaat
gagcggcaggaagagatagagggtaaaatctttgctaatcccagaaactgtgccgcaggc
acgctgcggcagttagatccgggtgtagttgctgaaagggatttatctatttttgtcttt
aatcttcaggcaattcaaggaaaggaatttacctctcacgcggagacacttgactggttg
gcgacgcaagggtttgcagtacccaaatatattacgtgcactacagaagaaggcgtttgg
gatgcgatcaccttaatcgatgaaacccggggtgagctgccatttggaatagacggtgca
gttgtaaaattagataatctggctgatcgtgagaaacttggtgccagttccaaagtgccg
cgatgggctattgcctataagtatcctccggaagaaaaggcaactaaggtgttagatatc
gaagtaaatgttggccgaaccggccgcctaactcccttagcgattctggagcctgtcagg
ttagcgggtacaaccgtttctcgtgcatcgctgcataatcaggatcaaattgaccggctg
gatatacgcattggggatacagtaatcgtacgcaaagcagctgaaattattccggagatt
gttagggttataaaggagcagcgtgcccatggtactactccttttaaaattcctgataga
tgtccggtctgcggtgctcctgctttacggggggaagacgcagccgacatccgttgcagc
ggaattaactgcccggcacagcttgcacggcttattattcactttgcatcccggggagca
atggatatagaaggtctgggaccggctgccgttcattcccttatggacaaaggctatata
aaggatattgccgatatatactatctcaaaaattatcgggatgagtttattgccagtggg
attactccccggtctcgtaaacaagtggctccatataaggatgggagagcacgtaaacag
aaggaacctgattacacagccagtacggataatttacttgctgccatagagcgctcaaaa
gagcaaaatcttgagcggctcataaacggttttggaataccaaatataggtaaacagaca
ggaagtattttagaggaaaactttcctgatatacaggctattgctaagattagttatgat
aaatataagcagttgcaagacagcgaaaaacaattaaaaaaagaacgcagcaaacttgct
aagctgctgaagacttctacgaagccggaggacgtagaactgcttagtgaaatggataag
cagctaagcgatatcgggaaagaactgaaggcaaatggagacatcaaaggtattggggaa
gtaagtattaaagcgattgctgctttttttgccgagccccaaaccaaagttatccttgag
cgtcttgaagaagctggcgttactatgaaatcaagatctgccggcaaagtgattgatgac
cgacttgagggggcaacatttgttcttactgggacattgcagacattgagccggggagaa
gcaactcaactaattcaggagcacggtgggcgcgttgctggtagtgtatcaaagaaaacg
acctatcttttagctggcgagggtgctggcgataagatgaataaagcgcagtctcttggt
attacgattattactgaggccgagtttttacatatgatcgaatag
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