Sporosarcina oncorhynchi: QWT69_12475
Help
Entry
QWT69_12475 CDS
T10260
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sow Sporosarcina oncorhynchi
Pathway
sow03030
DNA replication
sow03410
Base excision repair
sow03420
Nucleotide excision repair
sow03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QWT69_12475 (ligA)
03410 Base excision repair
QWT69_12475 (ligA)
03420 Nucleotide excision repair
QWT69_12475 (ligA)
03430 Mismatch repair
QWT69_12475 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sow03032
]
QWT69_12475 (ligA)
03400 DNA repair and recombination proteins [BR:
sow03400
]
QWT69_12475 (ligA)
Enzymes [BR:
sow01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QWT69_12475 (ligA)
DNA replication proteins [BR:
sow03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QWT69_12475 (ligA)
DNA repair and recombination proteins [BR:
sow03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QWT69_12475 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QWT69_12475 (ligA)
MMR (mismatch excision repair)
DNA ligase
QWT69_12475 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QWT69_12475 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Nlig-Ia
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
WOV86690
UniProt:
A0ABZ0L3E0
LinkDB
All DBs
Position
complement(2546644..2548656)
Genome browser
AA seq
670 aa
AA seq
DB search
MDRIEAEKRVQELTALLNEYGHAYYVRDNPLVPDSVYDRKLQELLAIEAEYPDLVFPDSP
TQRVGGEILPGFTKVVHEFPMLSLSNAFNEEDIRDFDRRVQAGAGKDITYICELKIDGLA
VSLKYDNGAFSQGATRGDGTVGEDITSNLKTIHAIPLKLAEPVTIEVRGEAYMPKRSFMR
LNELRDENGEEPFANPRNAAAGSLRQLDPKIAASRNLSVFIYGVGGDGSAYGQDSHSDSL
DYLASLGFETNSSSKRCKSIEEVIDYIESWQQRRQDLDYEIDGIVIKVDGYEDQEQLGFT
AKSPRWATAYKFPAEEVHSRLLDIELSVGRTGVVTPTAILEPVRVAGTTVARASLHNEDL
IREKDIRIGDAVIVRKAGDIIPEIVSVLIEQRTGTEEPYYMPEHCPVCDSELVRIEGEVA
LRCVNPQCPAQMKEAVIHFVSRNAMNIEGIGERVVDQLYTAELVNDAADLYALTKDQLLE
LERMGEKSATNLLTAIQVSKENSLEKLLFGLGIRHVGERASHILSEEFGTLEAIAEADAE
RLTSIHEIGDKVADSIITFFANEDVQKVIGKLKEHGVNMIYKGPDRQEVPTDGPFAGKTI
VLTGKLSILTRNDAKAQIEALGGKVSGSVSKKTDLVIAGEDAGSKLTKAEELGITVWNET
ELIDALGEKE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggatcgaattgaagctgaaaaacgtgtgcaggaactgacggcactgttgaatgagtat
gggcatgcctactacgtgcgagataatccgctcgtgccagactccgtctacgatcgtaaa
ttgcaggagttgctggccattgaagccgaatatcccgatcttgtctttcctgactctcct
acgcagcgggtaggtggagagattcttccgggcttcacaaaagttgtccatgaatttccg
atgctgagcctctccaatgccttcaatgaagaggacattagggattttgatagacgagtc
caagcgggggcaggaaaagatattacgtatatatgcgaattgaaaatagatggacttgct
gtttcattaaaatatgacaacggtgcattcagtcaaggggcaacgcgtggagacggaaca
gtcggcgaagatattacttccaacttgaaaacaattcatgccatcccgctaaaattagca
gaacctgtcacaattgaagtccgcggagaagcgtatatgccaaaacgctctttcatgcga
ttaaatgaactgcgtgacgaaaatggtgaagaaccatttgcaaatccacggaatgcagca
gcaggttcactccggcaattagatccgaaaatcgcggccagtcgaaatctatccgtattt
atctatggagttggtggagatggaagtgcttatgggcaagatagccattcggattcctta
gattatcttgcttcactcggttttgagacgaattcatcaagtaagcgctgcaagtcaatt
gaggaagtaatcgactatatcgaatcttggcaacagcgcaggcaagatcttgattatgaa
attgacgggatcgtcatcaaagtcgatgggtatgaagatcaggagcagttgggtttcact
gcaaaaagtccgcgctgggcaacggcgtataaattcccggcggaagaagtgcattcgagg
ttgcttgatatcgaactgagcgtcggaaggacaggggttgtgacaccaactgcaatctta
gaaccagtccgtgttgctggaacaacagttgcaagggcttcccttcacaatgaagatctc
atccgtgagaaggatatccgaattggggatgcggtcattgttcgtaaagcaggagatatc
atccctgaaatcgttagcgtcctcatagaacagcgtacaggaacagaagaaccttactat
atgcctgaacattgtcccgtatgtgattctgaactagtccgtattgaaggggaagtagcg
cttcgttgcgtgaatccacaatgccctgcgcagatgaaagaagcagtcattcactttgtt
tcgcgaaatgccatgaatattgaagggattggcgagcgtgttgtcgaccaattatatacg
gcggaacttgtgaatgatgcggctgatttgtatgcgctgacgaaagatcagctgctggaa
ttagagcgtatgggagagaaatcagcgacgaatttactgacagccatccaggtatctaag
gagaattcattagaaaaactgttgtttggtctaggaatacgtcatgtaggtgaacgggca
tcacatatcctatctgaagaattcggcacacttgaagcgatagcagaagcggatgcagag
cgccttacttccatccatgaaatcggcgacaaagtagctgattcaatcatcacgtttttt
gcgaatgaagatgtccaaaaggtgattggcaaactgaaagagcacggcgtgaatatgatc
tataaaggacctgatcgccaggaagttccgacggatggcccttttgcgggaaagacaatc
gttttgacaggcaagttatcaatattgacgaggaacgatgcaaaagcacaaatagaagca
cttggcggcaaagtgagcggcagtgtcagtaaaaagacggacctcgttatcgcgggtgaa
gatgccggttcaaagctgacaaaagctgaagagcttggtatcaccgtctggaatgaaaca
gagttaatagacgcgctcggtgaaaaggagtaa
DBGET
integrated database retrieval system
