Candidatus Nanosynbacter lyticus: TM7x_02665
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Entry
TM7x_02665 CDS
T03502
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sox
Candidatus Nanosynbacter lyticus
Pathway
sox03030
DNA replication
sox03410
Base excision repair
sox03420
Nucleotide excision repair
sox03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TM7x_02665 (ligA)
03410 Base excision repair
TM7x_02665 (ligA)
03420 Nucleotide excision repair
TM7x_02665 (ligA)
03430 Mismatch repair
TM7x_02665 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sox03032
]
TM7x_02665 (ligA)
03400 DNA repair and recombination proteins [BR:
sox03400
]
TM7x_02665 (ligA)
Enzymes [BR:
sox01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TM7x_02665 (ligA)
DNA replication proteins [BR:
sox03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TM7x_02665 (ligA)
DNA repair and recombination proteins [BR:
sox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TM7x_02665 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TM7x_02665 (ligA)
MMR (mismatch excision repair)
DNA ligase
TM7x_02665 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TM7x_02665 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
PTCB-BRCT
HemN_C
HHH_3
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
AJA06559
UniProt:
A0A6S4GQ80
LinkDB
All DBs
Position
complement(500288..502300)
Genome browser
AA seq
670 aa
AA seq
DB search
MIAKKARADEIKSLLNRYSYEYYTLDKPSVSDAVYDSLMDELKSIEAECPELITIDSPTQ
RVGNKLLDGFQKVKHERRMVSLNDVFNKGEIEAWIERTDKLMPGHKHEFFTDIKMDGLAC
ALIYIDGVLTQAVTRGDSFVGEDVTNNVRTIKNVPLRLHEAPGFEQFLRGRTEIRGEIVM
LKRDFAELNEKQKALGQPEFANPRNLAAGTIRQLDPSLVAARPLHFRGYDVLRDDDAEVP
TNSFAYEALTALGITRNHQASTFTNLADVMNFVNEWDNKRHDLPFNTDGLVIKINDRSLY
ESLGLVGKNPRGAVAYKYAAEQATTIVRDIVISIGRTGPATPVAVFDPVVVAGTTVQHAS
LHNADEIARLDVRRGDTVVIFKAGDIIPQVESVLKELRPAGSKPIDYLAELARQYPELEF
VRPAGEAVYRVKGLSGPLILKRSLAHFASKGALDIDTLGEKNVEALVEAGLVNDLADIYR
LTKDDLLGLERFAEISAQKLIDAIAAKKQPALERFLFGLGIRHVGAQTAIDLTNHFESVE
KLSQATIDELREVDGVGEIVAESIVAWFADEDNVKLLEKFSDLGVTPQFSQKSDRLAGQS
FAITGTLQSMGRDAAVEKIRNLGGTFQTAVAKDTTYLVAGGKIGASKLKKAKQYGTKIID
EQELLQIIKE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgatagcaaaaaaagcaagagccgatgaaattaaatcgttattaaatcggtatagctac
gaatattacaccttagataagccgagtgtaagtgatgctgtctacgatagcttgatggat
gagttgaagtcaatcgaagctgaatgtccggagctaattacaattgatagcccaacgcaa
cgtgtcggcaataagttgcttgacggctttcagaaagtaaagcacgagcggcggatggtg
agcttaaatgacgtttttaataagggcgaaatcgaggcctggattgagcgtactgataaa
ctgatgccgggacataagcatgaattttttaccgatatcaagatggatggcctggcgtgc
gcgttgatttatattgatggcgtgttgacgcaggcggtaacgcgcggtgatagctttgtc
ggtgaagatgtaacaaacaacgtgcggactattaaaaacgtaccgttgcggttgcatgag
gcgccaggctttgaacaatttttgcgcggacggacggaaattcgtggcgagattgtgatg
ctgaagcgcgactttgcggagcttaacgaaaagcaaaaagccttggggcagccagaattt
gctaatccgcgtaatctggcggcagggacaatccgccagctcgatccttctttggtggcg
gcgcgaccgctgcattttcgcggctatgatgtacttcgcgatgacgacgctgaagtgccg
accaacagctttgcttacgaggcgctgactgctttaggaattactcgtaatcaccaggcg
agcactttcactaacttagctgatgtgatgaactttgttaacgaatgggacaataagcgt
catgatttgccatttaatactgacggtttggtgattaaaatcaatgatcgatcgttgtat
gaaagtctcgggttggttggtaaaaatccgcgcggtgccgtggcctacaagtatgccgct
gagcaagccacgaccatcgtccgcgatattgttatttccatcggtcgaaccggtccggcc
acgccagtagcggtgtttgaccccgtggtggttgccggtacgacggtgcagcacgctagt
ctacacaacgccgacgaaattgctaggttggatgtgcgccgcggtgacacggtggtgatt
ttcaaggcgggcgatatcatcccgcaggttgagagtgtgttaaaagaattgcggccagca
ggctccaagccaattgattacttggcagaactggcgcgccaatatccggagctagagttt
gtgcggccagcaggcgaggcggtgtaccgcgttaaaggcttgagcggcccactgattttg
aagcggtctctggcgcattttgcctccaaaggcgcactggacatcgatacgctgggcgag
aaaaatgtcgaggcgctggtcgaagctgggctggtcaatgatttggcggatatttaccgg
ttgacgaaagatgatttattggggctagagcgtttcgctgagatttctgcgcaaaagctc
attgatgccattgctgctaagaaacagccagccctggagcgattcttgtttggactcggt
attcgccatgtcggcgcccagacagcgattgacctcacaaaccactttgaaagtgttgag
aagctaagtcaagcgactattgatgagctacgcgaagtggacggcgtgggtgaaatcgtc
gccgagtcaatcgtggcgtggttcgctgatgaagataatgtgaagctgctcgaaaaattt
tctgacttgggtgtgacgccgcagtttagccaaaaatccgaccgactggctggtcaaagt
tttgccatcactggcactctgcaatcgatgggccgtgatgccgccgtcgaaaaaatccgc
aatctcgggggcaccttccaaaccgctgttgcaaaagatacgacatatttggtagctggc
ggtaaaattggtgccagcaaactgaaaaaagccaaacaatacggcactaaaattattgat
gagcaagaacttctacaaattataaaagaatag
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