Spathaspora passalidarum: SPAPADRAFT_135852
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Entry
SPAPADRAFT_135852 CDS
T03101
Name
(RefSeq) ATP dependent RNA helicase and U5 mRNA splicing factor
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
spaa
Spathaspora passalidarum
Pathway
spaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPAPADRAFT_135852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spaa03041
]
SPAPADRAFT_135852
Spliceosome [BR:
spaa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
SPAPADRAFT_135852
Complex C
U5 SnRNP specific factors
SPAPADRAFT_135852
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFG_C
EFG_IV
GTP_EFTU_D2
MMR_HSR1
EFTUD2
Ras
FeoB_N
Roc
ATP_bind_1
FtsK_SpoIIIE
EF-G_D2
Septin
Peptidase_C71
AAA_29
Motif
Other DBs
NCBI-GeneID:
18869926
NCBI-ProteinID:
XP_007374563
JGI:
135852
UniProt:
G3AL05
LinkDB
All DBs
Position
Unknown
AA seq
949 aa
AA seq
DB search
MAADDELYDEFGNLIGDEFDSDAESSNESLASVEEESDQASDEEEEELHADSTSLIKRTE
EAGETIFIQPDEPMSNQPVIKPKIEKAMKIDFTANLSFTELEEKYKDLPELIYSRDFMIS
TMNQLPERIRNIAVVGNLHSGKSRFVDALILYTHSPSIKLKNTLKNFKPLRFMDNHKLEI
EREVTIKSSPITLLLQDLKDKSYVFNIIDTPGHVDFQDETTAAISCSDGVVLVIDVVEGL
TYRDKLLINQIMRENLPIVLVLNKFDRLILELKLPAKDCYLKLKYIVDDISEYINSNELI
STYTHAPISPIRDVVFASSTFEFSFTLKSFSKLYLTNQKSQMDIEKFSQKLWGDIYYDAV
NHKFTSKSDQLPRTFVSFILEPIYKIINYTLVSEPSQPKIAKLLWENFGVSLHKSEYKQD
SQVLLKSVFHVVFNAHCGFVDTVSKSIPPPALEKDENFVGKVVKLIESPDGKAFSSLVRV
YKGILKIGDKVKVYGDSFSENTEDFKIEVVEGIYIPGGRYKVPIREAGVGSLVIIDGIES
IIKKGATISDPALSMPGVTPKYTSNSVFKIALEPVNPSELPILLDAMRKINKSYLASVIT
VEESGEHVILAPGQLYMDCILHDLRNFFTDGLEIRISDPMTKFSETCIDTSFTKIPVNTE
SNEISIIAEPVNDDKLSRAIESGKICLQQPTKVLSKTLRTEFGWDSLAARSVWAFGPDDL
QLPNILLDDTLESETDKSNLLSVKDSIVLGFKWGVNEGPLCDEPIRNTKFRILDAVINGS
ELYKSSSQIIPLARRACYTGLLTATPKLMEPIYRLDATCTYRAISVVKELLKRRRGEFVR
EDPIPGTQLFSVLGYVPVIDSVGLEVDLKLHSQGQATCYLSFANWEVVPGDPLDQNCELP
SLKPVPHESLARDFVLKTRRRKGLSGEPSLQKYIDPDLYIKLKEKGLVQ
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgatgacgaattatacgatgagtttgggaacttgataggagacgagtttgat
tcagatgctgaaagttcaaatgaatctttggcttctgttgaagaagaatcagaccaagcc
agcgatgaggaagaggaggaactacatgcagacagcaccagcttaataaaacgtacagaa
gaagcaggagaaactatctttattcaaccagatgaaccaatgtcaaatcagccagttatt
aaacctaaaattgagaaagctatgaaaattgacttcacagccaacttatccttcaccgaa
ttagaagagaaatacaaagatcttcccgaattgatatactcccgcgattttatgatttcc
acaatgaatcaacttcctgaaagaatacggaatattgccgttgtagggaatcttcacagt
gggaagtcgagatttgttgatgcattaatcttgtatactcactcaccttctataaaactc
aagaatacacttaaaaactttaaacctttgaggtttatggacaatcacaaattagaaatt
gaacgagaagtaactataaaatcttcaccaattactttattgttgcaagacttaaaggac
aaatcatatgtgtttaatattatagataccccgggacatgttgacttccaagatgaaaca
acagctgccataagctgctcggatggagtagtacttgtgattgacgtagttgaaggatta
acctacagagataaactactcataaaccaaatcatgcgtgagaatcttccaattgtactt
gtattgaataaatttgataggctcattttagagcttaaattacctgctaaagactgctat
cttaaattgaaatatattgttgatgatatcagtgagtacataaattctaatgagttaata
tcgacatatacgcatgcacctatttcgcctatacgtgatgttgtttttgcatcttcaaca
tttgaattttcattcacattgaaaagtttctcgaaactttatcttaccaatcagaagtcc
caaatggatatcgagaaatttagtcagaaattatggggagatatctattatgatgcagtt
aaccacaagttcacctccaaatcagatcaacttccaagaacattcgtatcatttattctt
gaaccaatttataagataataaactatactctcgtttcagaaccgagtcaaccgaaaatt
gcaaagttattatgggaaaacttcggtgtatcattacacaaatcggaatataaacaagat
tcccaagtgttgttgaaatctgtgtttcatgttgtgtttaatgcacattgtgggtttgtt
gatacggtatctaaatctattccgccaccggcattagaaaaggatgaaaattttgttggg
aaagtggtgaaattgattgaatcgcctgatgggaaagctttcagttctttagttagagta
tacaagggcattctaaaaataggtgacaaagttaaagtgtatggcgattcattttcagaa
aatactgaggattttaaaatcgaagtggtagaaggaatttatattcccggtggaagatat
aaagtacctattcgcgaagcaggagtgggttcacttgttatcattgatggtattgagtca
attattaaaaagggggcaactatatctgatccagcattgtctatgccgggagtaacacct
aagtacacttctaactcggtattcaaaattgcgttggaaccagttaatccttcggagtta
cctatactattagatgccatgagaaaaatcaacaaatcctaccttgcatcagttatcacc
gtggaagaaagtggagaacatgttatattagcaccaggacagttgtacatggattgtata
ttgcatgatttgcgaaatttctttactgatggattggaaattagaataagtgatcccatg
actaaattttccgaaacttgtattgatacttcatttacaaaaatcccggtaaacacagag
tcaaatgagatttctataattgctgaacctgtgaatgatgacaaattaagtcgtgcaatt
gaatccggcaaaatttgcttacaacaaccaacaaaggtattatcgaaaacattaaggacc
gaatttggctgggattcacttgctgctaggtcggtatgggcatttggacctgatgatttg
caacttcctaatattttacttgatgataccttggaatcggaaaccgataagtccaatctt
ctttcagttaaagatagtatagttctcgggttcaaatggggtgtcaatgagggtccatta
tgtgatgaacctatcagaaatacaaaatttagaattctagatgctgtaattaatggatca
gaattatataaatcctcgagtcaaatcatccccttggccagaagagcatgttacactgga
ttactaactgcaactccaaaattaatggaaccgatttatcgccttgatgcaacctgtaca
taccgtgctatttcagtggtcaaggagttattgaaaaggagaagaggtgaatttgtacgc
gaggatcctattcctggaacacaattgtttctggttctagggtatgtaccagtcatcgac
tctgttggtcttgaagtagatttgaaacttcattcgcaggggcaagcaacttgttatctt
ctgtttgctaattgggaagtagtgccaggtgatcccttggatcaaaattgtgaattgcct
agtttgaaaccagtacctcatgaatcactagcacgagactttgtcttaaaaacaagaaga
agaaaaggattatcgggtgaaccaagtctacaaaaatatattgatcctgatttgtatatt
aaattgaaagagaaaggtctcgttcaataa
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