Sphingobium sp. AntQ-1: sphantq_00092
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Entry
sphantq_00092 CDS
T10291
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
spag Sphingobium sp. AntQ-1
Pathway
spag03030
DNA replication
spag03430
Mismatch repair
spag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
sphantq_00092 (dnaE1)
03430 Mismatch repair
sphantq_00092 (dnaE1)
03440 Homologous recombination
sphantq_00092 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spag03032
]
sphantq_00092 (dnaE1)
03400 DNA repair and recombination proteins [BR:
spag03400
]
sphantq_00092 (dnaE1)
Enzymes [BR:
spag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
sphantq_00092 (dnaE1)
DNA replication proteins [BR:
spag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
sphantq_00092 (dnaE1)
DNA repair and recombination proteins [BR:
spag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
sphantq_00092 (dnaE1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
PucR
tRNA_anti-codon
T2SSK
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
WCP11712
LinkDB
All DBs
Position
1:complement(91141..94680)
Genome browser
AA seq
1179 aa
AA seq
DB search
MPHAPFAPLRVFSSYTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDGCKDE
GVQPIIGAMLGVLRPGRPANAPMHDWLALYAQDAAGYDNICALVSMAHLDRPVEEVPHVT
VEALAGRTDGLIALTAGGEGALARLFAEDQPDAAVAYVERLEALFPGRLYVEICRRLDPV
EGKAEPHLIDLAHERGLPLVATNPTCFTEPHFHEAHDVMLCIADSAYVDMPDRRTSSPDA
WMKPAGEMKRLFEDLPEALANTLVVAQRCAVAAPKRKPILPSLAGDIEGEARMLRDLASA
GLDARLAKLGIIADEARQPYIERLKFETDIIIQMGFPGYFLIVADFIKWAKDHDIPVGPG
RGSGAGSVVAWALLITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQQK
YGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLERSLNGVA
EFRAEYDNDKQVRRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLQQLVPLYRDPRSDMPVT
QFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLAARGVTVDLDTLAWDDGAVYDLLQRGD
TVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFGRRKNGQEEIEYPHI
LLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVKAEMDAQRSRFVEGC
AASDIKPAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPAEFYAGSMAFDI
HLTEKLTVFVDDMRRMGLTCLAPDLNRSQADFTVEAVPCEGEDKRLGFAVRYALGGLKGV
GEKAMEQLVAEREAAGPFQTLDDFADRIEPRLLNRRQLESLAAAGAFDGVHADRAGVHAA
AETILSVASSNAAARESGQGGLFGDVETPHADVRIPPHQAWTVADRMAQEKEAFGFYFSA
HPVDRYKHLAEARGARSYGAVCQAPMPAPNAEGRAMTIMAAMVEDVRWRETKRGARYANA
TFSDQSGQFQASCFDEGACKAIEELAADGDCALLVVELDRLPGEETPRVTVRGVEPFRAI
ASASRMELTVDVETPQAVEALAALLAGASGGRSEVFLRAPVGEGQAARLFLGDTYSLGAD
QVDAISTIKGLSIHRFERMDVKADGYKTRTRRTAMRLVV
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgcctcatgctcccttcgcaccgctgcgcgtcttttcctcctataccatgctggaaggg
gcgatcgatcccaagaagatcgccaagcaggccaaggctttgggctttccggcggcggcg
atcaccgatcgcaacgggctttacggatcgatggccttttccgacggatgcaaggatgaa
ggcgtgcagccgatcatcggcgcgatgctgggcgtattgcggccggggcggccggccaat
gcgccgatgcatgactggctggcgctctatgcgcaggacgccgcgggatatgacaatatc
tgcgcgctggtatcgatggcgcatctggatcgaccggttgaagaagtgccgcatgtgacg
gtcgaggcgctggccgggcggaccgatggcctcatcgccctgacggcgggtggagagggc
gctttggcgcggctgttcgcggaggaccagcccgacgcggcggtcgcctatgtcgagcgg
ctggaggcgctgtttcccggtcggctttacgtcgagatatgtcgtcgtctcgacccggtg
gagggcaaggcggagccacatctgatcgacctggcccatgaacgcgggctgccgctggtg
gcgaccaatcccacctgtttcaccgaaccgcatttccatgaagcgcatgacgtcatgctg
tgcatcgccgacagcgcctatgtcgacatgcccgatcgccgcaccagttcgcctgacgcc
tggatgaagccggcgggcgagatgaagcgcctgttcgaggatctgcccgaagcgctggcc
aatacgctggtggtcgcgcaacgctgcgccgtggccgcgcccaagcgcaagccgatcctg
cccagcctggccggcgatatcgagggcgaagcaaggatgctgcgcgacctggcgagcgcc
ggactggacgcgcgtctggcgaagttgggcatcatcgcggacgaggcgcgccagccctat
atcgagcgtctcaagttcgagacggacatcatcatccagatgggttttccgggctatttc
ctgatcgtcgccgacttcatcaaatgggcgaaggatcatgacattccggtgggtccgggc
cgtgggtccggcgcgggatcggtcgtcgcctgggcgctgctgatcaccgatctcgatccg
ctgcagctcggcctgctgttcgaacgcttcctgaacccggaacgcgtgtcgatgcccgac
ttcgacatcgatttctgcgaaacccggcgcggcgaggtgatccgctacgtccagcagaaa
tatggcgcggaccatgtggcgcagatcatcaccttcggtaagctcaaggcgcgcgcggtg
ctcaaggacaccgggcgtgtgctccagatgagctatggccaggtcgatcggctcgccaag
ctggtgccgaaccacccgaccgatccgtggacgctggagcggtcgctgaacggggtcgcc
gagtttcgggcggaatatgacaatgacaagcaggtccgccgcctgatcgattatgcgatg
aagctggagggctttccgcgccacagttccacccatgcggccggcgtggtgatcggcgac
cggccgttgcagcaactggtgccgctctatcgcgatccgcgatcggacatgccggtgacg
cagttcgacatgaaatatgtcgagggcgcggggctggtgaagttcgactttctgggtctg
aaaaccctgtcggtgttgcagaaggcggtgcagttgctggcggcgcggggcgtgaccgta
gatctggacacgctcgcctgggacgatggtgcggtctacgacctgctccagcgaggcgac
acagtcggtgtgttccagcttgaatcggaagggatgcgcaagacgctggcggcggtgcgg
ccgaccaatttcggcgatatcatcgctctcgtctcgctctatcgccccggcccgatggac
aatatcccgatgttcggccgccgcaagaacgggcaggaagagattgaatatccgcacata
ttgctgaagccgatcctcgaagaaacatacggcatcttcgtctatcaggaacaggtaatg
caggccgcgcaaatcctggccggctattcgctcggcgacgccgacctgctgcgccgcgcg
atgggcaagaaggtgaaggccgaaatggacgcgcagcgctcgcgcttcgtcgaaggctgc
gccgcgagcgacatcaagccggccaaggcgaacgaactgttcgacttgatcgacaagttc
gccggctatggcttcaacaagtcgcacgccgccgcctatgcgctgctcgcctatcagacg
gcgtggttgaaggcgcattatccggcggaattctatgccgggtcgatggcgttcgatatc
catctgaccgaaaaactgacggttttcgtggacgatatgcggcgcatggggctgacctgt
cttgcgcccgatctcaaccgcagccaggccgacttcaccgtcgaggccgtgccctgtgaa
ggcgaggacaagcggttgggctttgccgtgcgttacgcgctgggcgggttgaagggcgtg
ggcgagaaggcgatggagcaactggtcgccgagcgcgaggcggcggggccgttccagacg
ctggacgactttgccgaccggatcgagccgcgattgctgaaccggcggcagttggaaagc
ctggcggcggcgggggcgttcgatggcgtccatgccgatcgggcgggcgttcatgccgca
gcggaaaccatcttgtcggtggcgtcgagcaatgcagcggcgcgcgaaagcgggcagggc
ggcctgttcggcgatgtcgagacgccgcatgccgacgtccgcattccgccgcatcaggcc
tggaccgtggcggatcgcatggcgcaggaaaaggaggcgttcggtttctatttctcggcg
catccggtcgatcgctacaagcatctggccgaagcgcggggcgcgcgcagctatggcgcg
gtgtgccaggcgccgatgcctgcgcccaacgccgaagggcgggcgatgacgatcatggcg
gcgatggtcgaggatgtgcgctggcgcgaaaccaagcgcggggcgcgctacgccaacgcg
accttctccgaccagagcggccagtttcaggcgagttgtttcgatgagggcgcgtgcaag
gcgatcgaggaactggcggccgatggcgactgcgcgctgctggtcgtggaactggatcgg
ttgccgggcgaggagacgccgcgcgtgacggtgcggggggtcgagccgttccgggcgatc
gccagcgcgtcgcgcatggaattgacagtcgatgtggagaccccgcaggcggtcgaggcg
ctggcggctttgctggcgggtgcgagtggagggcggagcgaggtgttcctgcgcgcgccg
gtgggagaggggcaggcggcgcggctgttcctgggcgacacctatagtctgggcgcggat
caggtggatgcgatttccacgatcaaggggctgtcgatccaccggtttgagcggatggat
gtgaaggcggacggctacaagacgcgcacgcggcgaacggcgatgcggttggtggtgtga
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