Sphingobium sp. AntQ-1: sphantq_00235
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Entry
sphantq_00235 CDS
T10291
Symbol
hup_1
Name
(GenBank) DNA-binding protein HU
KO
K03530
DNA-binding protein HU-beta
Organism
spag Sphingobium sp. AntQ-1
Brite
KEGG Orthology (KO) [BR:
spag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spag03032
]
sphantq_00235 (hup_1)
03036 Chromosome and associated proteins [BR:
spag03036
]
sphantq_00235 (hup_1)
03400 DNA repair and recombination proteins [BR:
spag03400
]
sphantq_00235 (hup_1)
DNA replication proteins [BR:
spag03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
sphantq_00235 (hup_1)
Chromosome and associated proteins [BR:
spag03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
sphantq_00235 (hup_1)
DNA repair and recombination proteins [BR:
spag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
sphantq_00235 (hup_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-CCDC81_euk_1
DUF2267
GTP_EFTU_D2
DUF937
Glyco_transf_29
Motif
Other DBs
NCBI-ProteinID:
WCP11841
LinkDB
All DBs
Position
1:complement(235407..235679)
Genome browser
AA seq
90 aa
AA seq
DB search
MNKQDLISAVAESSGLSKNDATKAVEGVFDAITGALKKGDEVRLVGFGTFSVSQRKASTG
RNPRTGETMTIKASAQPKFKAGKGLKDSVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagcaggatttgatcagcgcagtcgctgaaagcagcggcctcagcaagaatgac
gcgacgaaggctgtggaaggcgtgttcgacgccatcaccggcgctctgaagaagggcgac
gaagtgcgcctcgtcggtttcggcactttctcggtttcgcagcgcaaggcttcgaccggc
cgcaatccgcgcaccggcgagacgatgaccatcaaggcttcggcgcagccgaagttcaag
gccggcaagggcctgaaggattcggtcaactaa
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integrated database retrieval system
