Sphingobium sp. AntQ-1: sphantq_00238
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Entry
sphantq_00238 CDS
T10291
Symbol
ruvB_1
Name
(GenBank) Holliday junction ATP-dependent DNA helicase RuvB
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
spag Sphingobium sp. AntQ-1
Pathway
spag03030
DNA replication
spag03430
Mismatch repair
spag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
sphantq_00238 (ruvB_1)
03430 Mismatch repair
sphantq_00238 (ruvB_1)
03440 Homologous recombination
sphantq_00238 (ruvB_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spag03032
]
sphantq_00238 (ruvB_1)
03400 DNA repair and recombination proteins [BR:
spag03400
]
sphantq_00238 (ruvB_1)
Enzymes [BR:
spag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
sphantq_00238 (ruvB_1)
DNA replication proteins [BR:
spag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
sphantq_00238 (ruvB_1)
DNA repair and recombination proteins [BR:
spag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
sphantq_00238 (ruvB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_gamma3
DNA_pol3_delta2
DUF3646
DNAX_ATPase_lid
AAA
AAA_5
AAA_22
RuvB_N
AAA_30
AAA_assoc_2
AAA_14
AAA_16
AAA_19
Cdc6_lid
PIF1
DUF815
AAA_24
AAA_18
Glyco_tranf_2_5
Adeno_E1B_55K_N
AAA_2
Motif
Other DBs
NCBI-ProteinID:
WCP11844
LinkDB
All DBs
Position
1:complement(238714..240336)
Genome browser
AA seq
540 aa
AA seq
DB search
MSDSPQPYRVLARKYRPRSFRELIGQDAMVQTLGNAIRRGRLAHAFLMTGVRGVGKTSTA
RLIAKALNCIGPDGQGGPTIDPCGVCEPCVAIAEGRHIDVVEMDAASHTGVDDVREIIEA
VRYAAVSARYKIYIIDEVHMLSKNAFNALLKTLEEPPAHVKFLFATTEVNKVPVTVLSRC
QRFDLRRIPAELLAGHFAHVVEAESVAAEPDALALIAQAAEGSARDGLSILDQAIAHAEM
GDGDPMVSAAQVRDMLGLSDRGSVRRLLGLLLEGDTGALLGAVRDQYALGVEPLALMRGL
MELVHAVTLAKAGRDIASPGQSAEEREALADWAAQLGFAPLHRLWQLLLKGHDEVASAVL
PIESCEMALLRVMHAATMPDPGELARMLREGAPAMVAPASGGTPAAPSSAPAARLPATMQ
EIVALIDRQKPLLANHLNDCAALVSLSPPDIALRLTHAWTHGDFKRDLEQALNAATSGTR
WVVTLAESGGDQTLLEQEQAGKAAARAEILETPVVKAAIAAFPEAELVETDRPEQWSAGQ
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattccccgcagccctatcgcgtcctggcgcgcaaatatcgaccgcgcagtttc
cgtgaactgatcgggcaggatgcgatggtccagacgctgggcaatgcgatcaggcgcggc
cggctggcccacgccttcctgatgaccggcgtgcgcggggtggggaagacctccaccgcg
cggctgatcgccaaggcgttgaattgcatcggcccggacgggcagggcgggccgaccatc
gacccctgcggtgtgtgcgaaccttgcgtcgccattgccgagggtcggcatatcgacgtg
gtcgaaatggacgccgccagccacaccggcgtggacgatgtgcgcgagattatcgaggcg
gtgcgctatgccgccgtgtcggcgcgctacaaaatctacatcatcgacgaagtccatatg
ctctccaaaaacgccttcaacgcgctgttgaagacgctggaggagccgcccgcccatgtg
aaattcctgttcgccacgaccgaggtgaacaaggtgccggtgacggtgctgtcgcgctgc
cagcgcttcgacctgcgccgcatcccggcggaattgctcgcgggccatttcgcgcatgtg
gtcgaggcggaaagcgtcgcggcggaacccgatgcgctggcgctgatcgcgcaggcggcc
gaagggtccgcgcgcgacggcctgtcgatcctcgaccaggcgatcgcccatgcggaaatg
ggggacggcgatcccatggtcagcgccgcgcaggtgcgcgacatgctgggcctttcggac
cgcggatcggtgcgccggctgctgggcctgctgctggaaggcgatacgggcgcgttgctg
ggcgcggtgcgcgaccaatatgcgctgggcgtcgagccgctcgcgctgatgcgcggcctg
atggagctggtccatgccgtgaccctggcgaaggccggtcgcgacatcgccagccccggc
cagtcggccgaagagcgggaggcgctggccgattgggctgcgcaactgggcttcgcgccg
ctgcatcgcctgtggcaattgctgctcaaggggcatgacgaggtggccagcgccgtcctg
ccgatcgaaagctgcgaaatggcgctgctgcgcgtcatgcacgccgcgaccatgcccgat
ccgggcgaactggcgcggatgctgcgggagggggcgcccgccatggttgcgcctgcttcc
ggtggaacgcctgccgcgccgtcctccgcgcccgccgcgcggctgcccgctacgatgcag
gaaatcgtcgcgctgatcgaccggcagaagccgttgctggccaatcatctcaatgattgc
gccgcgctcgtctcccttagcccgcctgatatcgcccttcgcctgacccatgcctggacg
catggcgacttcaagcgtgacctggagcaggcgctgaacgccgcgacatccggaacgcga
tgggtcgtgacgctggcggagagcggcggcgatcagacgctgttggagcaggagcaggcg
ggcaaggctgcggcgcgcgccgagatattggaaaccccggtggtcaaggcggcgatcgcc
gccttccccgaagcggagttggtcgaaaccgaccggcccgaacaatggagtgcaggacaa
tga
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