Sphingobium sp. AntQ-1: sphantq_00861
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Entry
sphantq_00861 CDS
T10291
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spag Sphingobium sp. AntQ-1
Pathway
spag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
sphantq_00861 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spag03019
]
sphantq_00861 (pnp)
03016 Transfer RNA biogenesis [BR:
spag03016
]
sphantq_00861 (pnp)
Enzymes [BR:
spag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
sphantq_00861 (pnp)
Messenger RNA biogenesis [BR:
spag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
sphantq_00861 (pnp)
Transfer RNA biogenesis [BR:
spag03016
]
Prokaryotic type
tRNA degradation factors
sphantq_00861 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
BioW
OB_RRP5_4th
S1_2
Motif
Other DBs
NCBI-ProteinID:
WCP12462
LinkDB
All DBs
Position
1:complement(880377..882713)
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AA seq
778 aa
AA seq
DB search
MFDVKKVSIELAGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSF
DGESEPDIVAMIAASAALTLSGVPFMGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVA
ATGNAVMMVESEAKELSEEIMLGAVLFAHEASKKIANAIIDLAEKAAKDPWEVAKGDNLD
DLKKKLKKLIGKDITAAYKLTDKSARSNALNEARAKAKASFTAEGLDAQTVMAGIKLTKK
LEAEIVRGAILKDGKRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQSICTTTLGTK
DAEQMIDGLTGLHYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKD
EFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKDFAVLS
DILGDEDHLGDMDFKVAGTEAGITTMQMDIKIAGITREIFEAALTQAKEGRAHILGEMSK
ALSSTRTELSAHAPRIETLQIDKSKIREVIGTGGKVIREIVAETGAKVDIDDEGLIKISS
SDPAQIEAARKWILGITQEAEVGKIYDGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV
EKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGAELEDTRPAREPREPRSDRGPR
RDGGGDRGPRREGGEGRGDRGRGPRRDGGDRGPRRDRSEGGNDDGPAPGGLPDFLTQD
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacgtcaagaaagtatctatcgagctggccggcaagacgctgaccctcgaaacc
ggccgtatcgcgcgccaggctgacgccgccgtgctggcgacctatggcgaaaccgtggtg
ctgtgcgccgtgaccgccgcaaagagcgtgaaggaaggccaggatttcttcccgctgacc
gttcactatcaggaaaaatattcggccgccggccgcatccccggcggcttcttcaagcgt
gagcgtggcgcgacggaaaaggaaacgctggtttcccgcctgatcgaccgcccgatccgt
ccgctgttccccgaaggtttctataacgaaatcaacgtgattgcgcaggttctttcgttc
gatggcgaaagcgagccggacatcgtggcaatgatcgccgcttcggccgcgctgaccctg
tcgggtgtgccgttcatgggtccgatcggcgctgcgcgcgtgggctacaaggatggcgaa
tatcagctcaacccgtcgctggacgaagtgaagaccggcgaactcgatctggttgtggcc
gccaccggcaacgcggtgatgatggtcgaatccgaagcgaaggaactgtcggaagagatc
atgctgggcgcggtcctgttcgcccatgaagcgagcaagaagatcgccaatgcgatcatc
gacttggctgaaaaggccgccaaggatccctgggaagtggccaagggcgacaatctggac
gacctgaagaagaagctgaagaagctgatcggcaaggacatcaccgccgcctacaagctg
accgacaagtcggcccgttcgaacgcgctgaacgaagcccgcgccaaggcgaaggccagc
tttaccgccgaaggcctggacgcccagaccgtcatggccggcatcaagctgaccaagaag
ctggaagcggaaatcgtgcgcggcgccatcctcaaggacggcaagcgcatcgacggtcgc
accaccacgcagatccgtccgatcgaagcgatggtcggcttcctgccccgcacccatggt
tcggcgctgttcacgcgcggtgaaacgcagtccatctgcaccaccacgttgggcaccaag
gacgccgagcagatgatcgacggtctgaccggcctgcattatgaaaacttcatgctgcac
tataacttcccgccctattcggtcggtgaagtcggccgcttcggcgcgccgggtcgtcgt
gaagtgggccatggcaagctggcatggcgtgcgctgcaccccgtgttgccgagcaaggac
gagttcccctacacgatccgcgttctgtcggacatcaccgaatcgaacgggtcttcctcg
atggccaccgtctgcggcggttcgctctcgatgatggacgccggtgtgccgttgaagcgc
cccgtgtccggcatcgccatgggcctgatcctggaaggcaaggatttcgccgtcctgtcc
gacattttgggtgacgaagatcacctcggcgacatggacttcaaagttgccggcaccgaa
gcgggcatcaccacgatgcagatggacatcaagattgcgggcattacgcgcgaaattttt
gaagccgcgctgacgcaggcgaaggaaggccgtgcgcatatccttggcgaaatgagcaag
gcgctgtcctcgacccgcaccgaattgtcggcgcacgccccgcgcatcgagacgttgcag
atcgacaagtcgaagatccgcgaagtcatcggcaccggcggcaaggtcatccgcgaaatc
gtcgccgaaaccggcgcgaaggtggacatcgacgatgaaggcctgatcaagatcagctcg
tccgaccccgcgcagatcgaagcggcccgcaagtggatcctcggcatcacgcaggaagcg
gaagtcggcaaaatctatgacggcaaggtcgttaacatcgttgatttcggcgccttcgtg
aacttcatgggtggcaaggacggtctcgtccatgtgtccgaaatgaagaatgagcgcgtt
gaaaagccgaccgacgtcgtgtcggaaggccaggaagtgaaggtcaaggttctcgaaatc
gacccgcgcggcaaggttcgcctgtcgatgcgcgtcgtcgatcaggaaaccggcgcggaa
ctggaggacacccgtcccgcccgcgaaccgcgcgaaccgcgcagcgatcgcggtccgcgt
cgtgatggcggtggcgatcgtggcccgcgtcgcgaaggcggcgaaggccgtggcgatcgc
ggtcgtggcccgcgccgcgacggcggtgaccgtggtccccgtcgtgaccgcagcgaaggc
ggcaatgatgacggcccggcgccgggcggtctgcccgacttcctgacccaagactaa
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