Sphingobium sp. AntQ-1: sphantq_01007
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Entry
sphantq_01007 CDS
T10291
Symbol
phrB
Name
(GenBank) (6-4) photolyase
KO
K06876
(6-4)DNA photolyase [EC:
4.1.99.13
]
Organism
spag Sphingobium sp. AntQ-1
Brite
KEGG Orthology (KO) [BR:
spag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spag03400
]
sphantq_01007 (phrB)
Enzymes [BR:
spag01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.13 (6-4)DNA photolyase
sphantq_01007 (phrB)
DNA repair and recombination proteins [BR:
spag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
Direct repair
sphantq_01007 (phrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DPRP
Motif
Other DBs
NCBI-ProteinID:
WCP12605
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All DBs
Position
1:1025312..1026856
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AA seq
514 aa
AA seq
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MGMTDGPVLIAILGDQLAPDIAALRDADKARSVVLMMEVADETTYVRHHKAKIAFILSAM
RHHADRLRALGWTVDYVKLDDTANSGSFTGEVARAVERHKPVAIHVTEAGEWRVQAMLDG
WALRFGLPVTVHEDDRFLCSHGAFDTWAAARTRLRMEYFYRDMRRKTGLLMTAEGKPEGG
EWNYDADNRKPPPQRDLLMPQPIRFRPDAITRDVLGIVADRFADHIGSLDHFHFAVTHED
AMRQQRRFLDEALPHFGDYQDAMLTDEPFLWHAILSPYINVGLLDPLALCRAVEARYRAG
KAPLNCAEGFIRQIIGWREYVRGVYWHEGPDYARRNALGATRPLPGFYWTGETDMHCMAQ
AIGQTIDHAYAHHIQRLMITGNFALLAGIDPHQVHVWYLEVYADAYEWVELPNTIGMSQF
ADGGLLGSKPYAAGGAYINRMSDYCGTCRYDVKQRIGEDACPFNALYWDFLARNESALGR
NVRLAMPYRNWARMDEQVRAATRAQAARFLASLD
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgggcatgactgacggccctgttcttattgccatattgggcgaccagctcgcccccgac
atcgccgcgctacgagatgcggacaaggcgcgcagcgtcgtgctgatgatggaggtggcg
gacgaaaccacctatgtccgccatcacaaggccaagatcgccttcatcctgtccgccatg
cggcatcatgccgatcggttgcgggcgttgggatggacggttgattatgtaaagctagac
gataccgccaatagcggcagcttcaccggcgaagtcgcacgggccgttgaacgccacaaa
ccagtcgccatccatgtcaccgaggccggggaatggcgggtgcaggcgatgctcgacggc
tgggcgctccgctttggcctgccggtcacggtgcatgaagatgatcgcttcctctgttcc
catggcgcgttcgacacatgggcggcggcgcgcacccggttgcggatggaatatttctat
cgcgacatgcggcgcaagactggcctgctgatgacggcggaagggaagcccgaaggcggc
gaatggaattatgacgcggacaatcgcaagcccccgccgcagcgcgacctgctgatgccg
cagccgatccgctttcgtcccgatgcgatcacgcgcgatgtgctgggaatcgtcgcggat
cgcttcgccgatcatatcggcagcctagaccatttccatttcgcggtgacgcatgaggac
gcgatgcggcaacagcggcgcttcctggatgaggcgctgccgcattttggcgactatcag
gacgcgatgctgaccgatgagccgttcctgtggcacgcgatcctgtcgccctatatcaat
gtcggattgctcgatccgctggcgctgtgccgcgcggtcgaagcgcgctatcgggcgggc
aaggcgccgctcaattgcgccgagggattcatccgccagatcatcggctggcgcgaatat
gtgcgcggcgtctattggcatgagggaccggactatgcgcggcgcaacgcgctgggcgcc
acacggcccctgcccggcttctactggaccggcgagacggacatgcactgcatggcacag
gcgatcggacagacgatcgaccatgcctatgcccatcatatccagcggctgatgatcacc
ggcaatttcgcgctgctggcggggatcgacccgcatcaggtgcatgtctggtatctggaa
gtctatgccgacgcctatgaatgggtcgagctgcccaatacgatcggcatgagccagttt
gccgacggcggcctgctgggatcgaagccctatgcggcgggcggcgcgtatatcaacagg
atgtcggattattgcggcacatgccgctatgacgtgaagcagcggattggcgaagatgcc
tgtccgttcaatgcgctctactgggatttcctggcgcgtaacgagagtgcgctgggacgc
aatgtccggctcgccatgccataccgcaactgggcgcggatggacgagcaggtccgcgcc
gccacgcgggcgcaggcggcgcggttcctggcttcactggattag
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