Sphingobium sp. AntQ-1: sphantq_02013
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Entry
sphantq_02013 CDS
T10291
Symbol
xthA_3
Name
(GenBank) Exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
spag Sphingobium sp. AntQ-1
Pathway
spag03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
sphantq_02013 (xthA_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spag03400
]
sphantq_02013 (xthA_3)
Enzymes [BR:
spag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
sphantq_02013 (xthA_3)
DNA repair and recombination proteins [BR:
spag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
sphantq_02013 (xthA_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
WCP13584
LinkDB
All DBs
Position
1:complement(2013302..2014099)
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AA seq
265 aa
AA seq
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MADTLSICSWNINSVRARIDIVEQLLRLEAPDILCLQETKVVNETFPTEMFRRMGYVHQV
LNGQRMHHGVAIMSKVPVHEDDRFDWQANGEARHVGVRLDNGVRIENVYVPAGGDIPDRD
LNPKFGQKMDFLERMIQWSSALGSQPAILTGDFNIAPLECDVWSHKQLLNVVSHTPGECE
ILARLQASNDWVDIGRHFHPAPARLYTWWSYRAKDWAESDRGRRLDHMWMTKDVANKATS
HRVVEPARSWIKPSDHIPIITEFAF
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaccctctccatctgctcctggaacatcaattccgtccgcgcgcgtatcgac
atcgtcgaacaactgctgcggctcgaagcgccggacatattgtgcctgcaggaaaccaag
gtggtgaacgagactttccccaccgaaatgttccgccgcatgggctatgttcatcaggtg
ctgaatggccagcgtatgcaccatggcgtcgcgatcatgagcaaggtgccggtgcatgag
gatgaccggttcgactggcaggccaatggcgaagcgcgccatgtcggcgtgcggctcgac
aatggcgtgcggatcgagaatgtttatgtccccgctggcggcgacattcccgaccgtgat
ctcaatcccaaattcggccagaagatggatttcctcgaacggatgatccaatggtcgtcc
gcgctaggcagccaacccgccatcctgaccggcgacttcaacatcgccccgctggaatgc
gacgtctggagccacaagcaattgctcaacgtcgtcagtcacacgccgggggaatgtgaa
atcctcgcccggttgcaggcgtcgaacgactgggtcgatatcggccgccatttccatccc
gcgccggcgcgcctctatacctggtggagctaccgcgcgaaggattgggcggaatcggat
cgcggccggcgcctggaccatatgtggatgacgaaggacgtggcgaacaaggcgaccagc
catcgcgtggtcgaacccgcgcgcagctggatcaagccgtccgaccatatccccatcatc
accgaattcgctttctga
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