Sphingobium sp. AntQ-1: sphantq_02401
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Entry
sphantq_02401 CDS
T10291
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spag Sphingobium sp. AntQ-1
Pathway
spag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
sphantq_02401 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spag03019
]
sphantq_02401 (rne)
03009 Ribosome biogenesis [BR:
spag03009
]
sphantq_02401 (rne)
Enzymes [BR:
spag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
sphantq_02401 (rne)
Messenger RNA biogenesis [BR:
spag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
sphantq_02401 (rne)
Ribosome biogenesis [BR:
spag03009
]
Prokaryotic type
rRNA processing factors
sphantq_02401 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CHP02642
DnaJ_CXXCXGXG
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
WCP13962
LinkDB
All DBs
Position
1:complement(2400260..2403016)
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AA seq
918 aa
AA seq
DB search
MTMRMLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPREDREALLREERAHAEEEAALRADFDDDDHDLDHDSIA
PEGGVEYVEASHHHDDEEPGEDAEQTEGEGANDGTNSAPNGRRGGRGRGRGGDEAADELR
RKRMALRRRYKIQDVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGG
ISRKISNAADRKRLKTIIAEMALPSSMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREK
TLSAAAPALVHNDSDLIKRAIRDIYNKDIEEVIVEGEHGYRAAKDFMRLLMPSHVRRVKQ
YADPVSLFQRASVEEQLAAMYNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQT
AVATNLEAAREIARQLRLRDMAGLVVIDFIDMEVNSNIRKVEKAMKEALKDDRARIQVGR
ISGFGLMEMSRQRLRTGVLEASTRQCPHCEGTGLVRTASSAGLGALRMLEEEAARGRGNL
ITLRASQEAAFYVLNNKRRELDEIEQRYGVRIEILPDGEIEGARMSVEASGPRPERVVSY
APLPEEDDDLDVIEEEEEEEVEEAEAETEQEDRSNRGERADEDRDGGRRRRRRRRRRGGQ
REENRAGEDASDNGDAESEDEDEDVVIAEDANDAPVEAATAADDEEGSARRRGRRGRRGG
RRRREGSEDAATLEADTGESEETVGEVAEPVVEAPATEAVVEEAPAEDAPKTRRRPRARK
ANADVVPVAETVAEPVAEVAAEAAPVEAVAEEVPAKPKRPRRKKPVAAEADVVAEEAAPV
AEAPVAEEAPAKPKRPRRKKAVVAEAEAEDAAPAVEAAAEAAAPQTPVAETADAGNGEDG
VGEDGEPRRGWWQRTFGQ
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgcgtatgctgatcgacgcgcgccaccgggaagagacccgggtcgcggtcgtc
aagggtaaccggatcgaggaattcgacttcgagtccgctgagcacaagcagctcaagggc
aatatctatctggccaaggtcacccgcgtagagccttcgctccaggcggccttcgtggat
tatggcggcaaccgccatggcttcctcgctttcagcgaaatccacccggattattatcaa
atcccgcgtgaagaccgcgaggcattgctgcgcgaagaacgcgcccatgccgaggaagaa
gccgcgctgcgcgccgatttcgacgatgacgatcatgatctggaccacgactccatcgcg
cccgaaggcggcgtggaatatgtcgaagcgagccatcatcatgacgatgaagagccgggc
gaagacgccgagcagaccgaaggcgaaggcgcaaacgacgggaccaacagcgcgccgaac
ggccgtcgcggcggacgcggtcgtggccgcgggggcgacgaagccgccgacgaactgcgc
cgcaagcgcatggccctgcgccgccggtacaagattcaggacgtcatcaagcgccgccag
gtgctgctggtccaggtcgtcaaggaggaacgcggcaacaagggcgccgcgctgaccacc
tatttgtcgctcgccggccgctattgcgtgctgatgcccaacaccagccatggcggcggc
atttcgcgcaagatcagcaatgcggccgaccgcaagcggttgaagacgatcatcgccgaa
atggcgctgccttcttccatgggctgcatcgtgcgcaccgcgggcctccagcgcaccaag
ccggaaatcaagcgcgacttcgactatctcgcccgcctgtgggacgagattcgcgaaaag
acgctgagcgccgccgcgcccgcgctggtccataatgacagcgacctcatcaagcgagcg
atccgcgacatctacaacaaggatatcgaagaggtcatcgtcgagggcgagcatggctat
cgcgccgccaaggacttcatgcgcctgctgatgcccagccatgtgcgtcgcgtgaagcaa
tatgccgatccggtgtcgctgttccagcgcgccagcgtcgaggaacagctggcggcgatg
tacaaccccgtcgtccagctcaagtccggcggctatctggtcatcaacccgaccgaggct
ctggtgtcgatcgacatcaactcagggcgctcgacccgcgaacatggcatagaacagacg
gccgtggcgaccaacctggaagctgcgcgtgaaatcgcgcgtcagctgcgcctgcgcgac
atggccggcctcgtcgtcatcgactttatcgacatggaggtgaactccaacatccgtaag
gtcgagaaggcgatgaaggaggcgctgaaggacgatcgcgcccgcatccaggtcggccgc
atctccggcttcggcctgatggaaatgagccgccagcgcctgcgcaccggcgttctggaa
gcgtccacccgccagtgcccgcattgcgaaggcaccggcctggtccgcaccgcatcgtcg
gcgggcctgggcgcgctgcgcatgttggaagaggaagcggcgcgcggtcgcggcaacctc
atcaccctgcgcgccagccaggaagcggccttctacgtcctcaacaacaagcgccgcgaa
ctggacgagatcgagcagcgctatggcgtgcgcatcgaaatcctgcccgatggcgagatc
gaaggcgcgcgcatgtcggtcgaggccagcggcccgcggcctgagcgtgtcgtcagctat
gcgccgctgccggaagaggacgacgatctggacgtcatcgaggaggaggaagaggaagag
gtcgaggaagccgaagccgaaaccgagcaggaggaccgcagcaaccgaggcgagcgcgcg
gacgaagaccgcgatggcggacgccgtcgtcgccgtcgccgtcgccgtcgtgggggtcag
cgcgaggagaatcgtgccggtgaagacgccagcgacaatggcgacgcggaatcggaggat
gaagacgaggacgtcgtcatcgccgaagacgcgaacgacgcaccggtggaagccgctact
gccgccgatgacgaagagggtagcgcacgccgccgcggtcgtcgcggtcgccgtgggggt
cgtcgccgtcgcgaaggtagcgaagacgctgcgacgctcgaagccgacacaggcgaatcg
gaagagaccgttggcgaggtcgccgagccggtggtcgaggccccagctaccgaagccgtg
gtcgaggaagcgcccgccgaggacgcgcccaagacccgtcgccgcccccgcgcgcgcaaa
gccaatgcggatgtcgttccggtagccgaaaccgtggccgagccggtggcggaagtcgcc
gccgaggccgcgccggtcgaagccgttgccgaggaggtcccggccaagcccaagcgcccc
cgtcgcaagaagcctgtcgcagcggaagcggatgtcgttgccgaggaagccgcccctgtc
gccgaggcgcccgttgccgaggaggcgccggccaagcccaagcgtccgcgccgcaagaag
gccgtcgtcgccgaagcggaggctgaagacgccgcacccgcggtcgaagccgctgccgaa
gccgccgcgcctcagacgccagtcgccgaaaccgccgacgccggcaatggcgaggatggc
gtaggcgaagatggcgaaccgcgccgtggctggtggcagcgcaccttcggccaataa
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