Sphingobium sp. AntQ-1: sphantq_04287
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Entry
sphantq_04287 CDS
T10291
Symbol
ligD_3
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
spag Sphingobium sp. AntQ-1
Pathway
spag03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
spag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
sphantq_04287 (ligD_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spag03400
]
sphantq_04287 (ligD_3)
Enzymes [BR:
spag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
sphantq_04287 (ligD_3)
DNA repair and recombination proteins [BR:
spag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
sphantq_04287 (ligD_3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WCP15799
LinkDB
All DBs
Position
2:complement(587836..590337)
Genome browser
AA seq
833 aa
AA seq
DB search
MTRTQTKSADESLAIYRAKRDFGRTAEPSGAKLPSTGNGFVVQKHAATRLHYDFRLELDG
VLVSWAITRGPSVNPDDKRLAVRTEDHPLDYARFEGTIPKGEYGGGTVMLWDNGTWESIP
GKDPRETLPEGHLHFILHGRRMAGEWILFRLKPRGKEKGENWILRKVNDAFAGGSDDLVG
IHLTSVDTGRTMDEIATGKAVPKRKGAKPAASPSAASAKPFGKRKKAGTPPPFQPVQLAA
LVDHVPSGDRWIHELKYDGYRTLLAIGGGEGRAYTRSGLDWSDRFAGLIGDAVTLDVASA
LIDGEAVVIMPDGRTSFQALQAALKGDPGKIDYVAFDLLELDGEDLTQRPLLERKEMLAA
LIGEGRGHLRYSDHIVGRGEELFKSFCGAGLEGVISKRVDARYSGSRSGSWVKTKCIRRQ
EFVILGWTPSDKQRGFRSLLLGVNEKGKLRFAGKVGTGFTGDEIERLMDLMAPLEQKTAT
VEAPRAAVRGAHWIKPKLVAEVAYIEFTDEGVLRHSSYLGLREDKKPEAVVLEIEAPVAT
TANPAATSGVKISNRDRMIFPEGKLTKGELADYYEAVAQIMLPWAGSRPISLVRCPQGRD
KKCFFQKHDAGSFGDDVKQVGILEKDGHQEPYLFVDTPAGLLTCVQMGTIEFHGWGARIE
DVEKADRLVFDLDPDEGLDFKDVVSAAFHLQDVLGQMGLVTFPMVTGGKGVHVIAPLTPT
AEWPQVKDFAHRFAMALAQADPQRFTAALAKAKRTGKIFIDYLRNQRGATAVMPYSARSR
PFAPIAVPLTWEELRDLDTPNHWHIGDAPEMLKRAASKNLAHWGRTDQILPDL
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgaccaggacacagaccaagtcggcagacgagagccttgcgatctatcgggccaagcga
gactttgggcggaccgccgagccttcaggtgcgaagcttcccagcaccggcaacggcttc
gtcgtccagaagcatgcggcgacacgtcttcattatgatttccggcttgagctcgatggc
gtgctcgtcagctgggccatcacacgcggtccaagcgtcaatccggacgataagcgcctt
gccgtgcggaccgaggaccatccgctcgattacgcccgcttcgaaggcacgattcccaaa
ggcgaatatggcggcggaaccgtcatgctctgggacaatggcacctgggaatcgataccg
ggcaaggatccccgagagacgctgcccgaaggtcacttgcatttcatcctgcacggccgc
cgcatggctggcgaatggatcctgttccgcctcaagcctcggggaaaggagaagggggaa
aattggatcctgcgcaaggtgaacgatgctttcgccggcggctcggacgatctggtcggc
atccatttgaccagcgtcgacaccgggcgcaccatggacgagatcgccaccggcaaagcc
gtgccgaagcggaagggcgcgaagcctgccgcctcaccgtcagccgcttcggccaagccc
tttgggaagcgcaaaaaggcgggcacgccgcctccgtttcagccggtgcagctcgcggcg
ctggtcgatcatgtgccttcgggcgaccgatggatccatgaacttaaatatgatggctat
cgcacgctgctggcgatcggcggcggggaggggagggcctatacccgttcgggtctcgac
tggtcggatcgtttcgctggactgatcggagacgccgtcaccctggacgtggcaagcgcg
ctgatcgatggcgaggccgtggtgatcatgcccgatgggcgcaccagctttcaggccctg
caggcggcgctcaagggtgatccgggcaaaattgactatgtcgcattcgacctactcgag
cttgacggcgaggatctcacgcagcgaccgcttcttgaacgcaaggagatgctagcggcg
ctgatcggtgagggcaggggccatctgcgctactctgatcatatcgtcggacgcggcgag
gagctgttcaaaagcttctgcggcgcggggctggagggcgtcatctccaagcgtgtcgat
gcgcgctattccggctcgcggtccggctcctgggtgaagaccaaatgcatccggcgacag
gagttcgtgatcttgggctggacgccttcggacaagcagcgcggctttcgttcgctgctg
ctgggcgtcaacgagaagggcaagctgcgcttcgctggcaaggtcggtaccggctttacc
ggcgacgagatcgagcgtctgatggatttgatggcgccgctcgaacaaaagaccgcgacg
gtcgaagcgccgcgcgccgccgtacgtggggcacattggatcaagccgaagctggtcgcc
gaggtcgcctatatcgagttcacggacgaaggtgtgttgcgacactcgagttatctgggt
ttgcgcgaggacaagaagcccgaggccgtggtgttggagattgaagccccggttgcgaca
accgcaaatcctgccgcaaccagcggcgtcaagatcagcaaccgggatcgcatgatcttc
cccgagggcaagctcaccaaaggcgaactggccgactattatgaggcggttgcgcagatc
atgctgccttgggcaggaagccgaccgatcagcctggtccgctgcccccagggtcgcgac
aagaaatgcttcttccagaagcatgacgccggcagcttcggcgatgacgtcaagcaggtc
ggaatattggagaaggacgggcatcaggaaccctatcttttcgtcgacacaccggcgggg
ctcctcacctgcgtacagatgggcactatcgagttccatggctggggcgcgcgtatcgag
gatgttgagaaggccgatcgcctggtattcgacctcgatcccgatgaaggcctcgatttc
aaggatgtcgtctccgccgccttccatcttcaggatgtcttggggcagatgggactcgtc
acctttccgatggtcaccgggggcaagggcgtgcatgtgatcgcgccgctgacgccgacg
gcggaatggccgcaggtcaaggatttcgcgcatcgctttgccatggcgctcgcgcaggcc
gatccccaaagattcaccgctgcccttgcaaaggccaagcgcacgggcaagatcttcatc
gattatctgcgcaatcagcgcggcgcgacggccgtcatgccctacagcgcgcgctcccgg
ccctttgcgccgatcgcagtgccgctgacatgggaagaactgcgcgatctcgacaccccc
aaccattggcatatcggcgacgcgcctgagatgttgaagcgcgcggcatcgaagaatctg
gcgcattggggtcggaccgatcagatcctgccggacctgtga
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