Sulfurimonas paralvinellae: FM071_03730
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Entry
FM071_03730 CDS
T06862
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spal
Sulfurimonas paralvinellae
Pathway
spal03030
DNA replication
spal03410
Base excision repair
spal03420
Nucleotide excision repair
spal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FM071_03730 (ligA)
03410 Base excision repair
FM071_03730 (ligA)
03420 Nucleotide excision repair
FM071_03730 (ligA)
03430 Mismatch repair
FM071_03730 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spal03032
]
FM071_03730 (ligA)
03400 DNA repair and recombination proteins [BR:
spal03400
]
FM071_03730 (ligA)
Enzymes [BR:
spal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FM071_03730 (ligA)
DNA replication proteins [BR:
spal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FM071_03730 (ligA)
DNA repair and recombination proteins [BR:
spal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FM071_03730 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FM071_03730 (ligA)
MMR (mismatch excision repair)
DNA ligase
FM071_03730 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FM071_03730 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QOP45435
UniProt:
A0A7M1B704
LinkDB
All DBs
Position
701256..703208
Genome browser
AA seq
650 aa
AA seq
DB search
MNNQEYKEAVEKLNLWAYHYYVLDDPIMTDEGYDKLYHEVVAYEEAHPDEVLPNSPTQRV
GDVVSEGFVKAKHLSRMWSLEDIFNADDLQKWLEKTYRLDKNVTFYCEPKYDGASLNLIY
ENGMLREGITRGNGEEGELITQNVKTIRSIPLTIAHKELIEIRGEVVIFKDEFEKINKER
LKKGEPPFANPRNAAAGSLRQLDPSITASRNLVFLPYGVGVDSLPHKLLSDKMEYIYELG
FRRPPLRGITEGYDEIEAMYEQMKRERESYPMMLDGMVVKVNEIAAQIDMGYTVKVPRWA
VAYKFPAVEKITTLKDIILQVGRTGVVTPVAVVEPTDIEGAVVERATLHNFDEIERMDIR
IGDKVIILRSGDVIPKIVKVLTQERDGSEKKVERPKNCPVCGSELLQEEVLIKCQNLTCE
ARVVNSIIYFASKQCLNIDGLGIKIVEQLFNAGLIRNVLDLFHLTQEQLLQLEGFKEKKA
QNLLNAINGVKGCELWRFINALGIEHIGEVASKMIAEAFGLQYAHADKESLVEIDGIGDE
MAESYLEFMRVNSETVKELEAIIKPVAPEKKAEAKENPFKGKTVVLTGSMSEPRPKIKEM
LESLGAKVSGSVSKKTDFVIYGEDAGSKYDKAVSLGVTTLTEDEMREMLA
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgaataatcaagagtataaagaagcagtagaaaaactaaacctgtgggcatatcattac
tatgttttggatgatcccattatgaccgatgaggggtatgataagctctatcatgaggta
gtggcgtacgaagaagcacatcctgatgaggtattgccaaactcaccgacacagcgggtg
ggtgatgttgtcagtgagggatttgtcaaagcgaaacacctctcacgtatgtggtctctt
gaagatatcttcaatgctgatgatctgcaaaagtggctggaaaaaacctatagactcgat
aagaacgtcactttctattgtgagccgaaatatgacggtgcatcactcaatctcatttat
gaaaatggtatgctgcgtgagggaatcacacgcggtaacggcgaagagggtgagcttatc
acacaaaatgtcaagacgatacgctctattccgctgacaatcgcacataaagagctcatt
gagattcgcggagaagtcgttatctttaaagatgagttcgaaaagataaataaagagcgt
cttaaaaagggcgaaccaccctttgcaaatcctcgaaatgccgcagcgggaagtctgaga
caattagacccgagcattaccgcctcacgcaaccttgtttttctgccgtatggtgttggt
gtggattcattgcctcataaactgctgagtgataaaatggagtatatttacgaacttgga
tttcgtcgaccgccactaagaggcattacagaagggtatgatgaaatagaagccatgtat
gagcagatgaaacgagagcgtgagagttacccaatgatgcttgacggtatggttgtcaag
gtcaatgagatagctgcgcagatagatatgggctatactgtaaaagtaccgcgctgggca
gtcgcttataaatttccggctgttgagaagataacgacactcaaagatattatcttacag
gttggcagaacgggtgttgtaacacctgttgccgtcgttgagcctacggatattgaaggg
gcggtagttgagcgtgcaaccttgcataacttcgatgagatagagcgcatggatattcgc
attggtgataaggtcattatcttacgaagcggagatgttattcctaagatagtcaaagtc
ctcacacaggagagagatggcagtgagaaaaaagttgaacgtccgaaaaactgtcctgtt
tgcggcagtgaactgcttcaagaagaggtgcttataaagtgtcaaaaccttacatgtgaa
gcgcgcgttgtgaactccatcatctactttgcatcaaagcagtgtctcaacatcgacgga
ctgggaattaagatagttgagcagctttttaatgccggactgattcgcaatgtgcttgat
ctttttcacctcacgcaggaacaactgctgcagcttgagggctttaaagagaaaaaagcg
caaaatctgctcaatgctatcaacggagtaaaaggatgcgaactttggcgtttcatcaat
gcccttggcatcgagcatatcggtgaagtggcttcgaaaatgatagcagaagcctttggt
cttcagtatgctcacgcagataaagaatctcttgtggaaattgatggcattggtgatgag
atggcggagagctatctggagtttatgcgtgtgaacagtgaaacagtgaaagaattggaa
gctattataaagcctgttgcaccggagaaaaaagctgaggcaaaagagaacccttttaaa
ggcaaaactgttgtgcttacaggaagcatgagcgagccgcgtccaaagataaaagagatg
ctggagtctttaggcgcaaaagtgagcggcagtgtgagtaagaagacagacttcgtcatt
tatggcgaagatgcgggaagcaagtatgataaggctgtgagtcttggtgtgacgacactt
acagaagatgagatgagagagatgcttgcgtga
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