Streptococcus parapneumoniae: SP4011_10520
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Entry
SP4011_10520 CDS
T10256
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spam Streptococcus parapneumoniae
Pathway
spam03030
DNA replication
spam03410
Base excision repair
spam03420
Nucleotide excision repair
spam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SP4011_10520 (ligA)
03410 Base excision repair
SP4011_10520 (ligA)
03420 Nucleotide excision repair
SP4011_10520 (ligA)
03430 Mismatch repair
SP4011_10520 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spam03032
]
SP4011_10520 (ligA)
03400 DNA repair and recombination proteins [BR:
spam03400
]
SP4011_10520 (ligA)
Enzymes [BR:
spam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SP4011_10520 (ligA)
DNA replication proteins [BR:
spam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SP4011_10520 (ligA)
DNA repair and recombination proteins [BR:
spam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SP4011_10520 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SP4011_10520 (ligA)
MMR (mismatch excision repair)
DNA ligase
SP4011_10520 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SP4011_10520 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
BDT64635
UniProt:
A0ABN6TLK0
LinkDB
All DBs
Position
complement(1125225..1127183)
Genome browser
AA seq
652 aa
AA seq
DB search
MNKRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPDQVLADSPTHRVG
GKVLDCFEKYSHQYPLYSLQDAFSREELEAFDARVRKEVAHPTYICELKIDGLSISLTYE
KGILLAGATRGDGSIGENITENLKRVKDIPLTLPEELDITVRGECYMPRASFDQVNQARQ
ENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEVSPSTRDSQEKVLKHLEQLGFV
VNPKRILAENIDEIWDFIQEVGEERDNLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVA
YKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRKD
DTVIVYKAGDIIPAVLRVVESKRVSEEKLDIPTNCPSCDSDLLHFEDEVALRCINPRCPA
QIMEGLIHFASRDAMNITGLGPSIVEKLFAANLVKDVADIYRLQEEDFLLLEGVKEKSAS
KLYQAIQASKENSAEKLLFGLGIRHVGSKASQLLLQHFHSIENLAQADPEEVASIESLGG
VIAKSLQTYFATEGSEILFRELKEAGVNLDYKGQTVVADAALSGLTVVLTGKLERLKRSE
AKSKLESLGAKVTGSVSKKTDLVVAGADAGSKLQKAQELGIEVRDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaagaatgaatgagttagtcgccttactcaatcgctatgcgactgagtactat
accagcgataatccatcggtttcagacagtgagtacgaccgtctttaccgtgagttggtc
gagttagaaactgcctatccagatcaagtgttagcagatagtccgacccatcgtgttggt
ggcaaggttttagattgttttgaaaaatacagtcatcagtatcctctttatagtttgcag
gatgctttttcacgtgaggagcttgaagcttttgatgcgcgtgttcgtaaggaagtggct
catccgacctatatttgtgagctgaaaatcgatggcttatctatctcgctaacttatgaa
aaggggattttgcttgctggggcaacacgtggagatggttcaattggtgaaaatatcaca
gaaaacctcaaacgcgtcaaggatattcccttaactttgccagaagaactagatatcacc
gttcgtggggaatgttacatgccacgcgcttcttttgaccaggtcaaccaagctcgccaa
gaaaatggagagcctgaatttgccaatcctcgtaatgcggcagcaggcaccctgcgtcag
ttggatacagcagtagtagccaagcgtaatcttgcaacgtttctctatcaggaagtcagc
ccttcaactcgtgacagccaagaaaaggttttgaagcacctagaacagctcggttttgta
gtcaatcctaagcggattttggctgaaaacatagatgaaatctgggattttatccaagaa
gtaggagaggaacgggacaatctgccttatgatatcgatggtgtggtgattaaggtcaat
gacctggcaagtcaagaagaacttggttttaccgttaaggctccaaagtgggcagtagcc
tacaagtttcctgctgaggaaaaagaagctcaactcttatcagttgattggacagttggc
cgtacgggtgttgtaaccccaactgcaaatctgactcctgttcagctagctggtacaaca
gttagtcgtgcgaccctgcacaatgtggattatattgctgaaaaagatatccgtaaagac
gacacggtcatcgtctataaggccggggacatcatccctgccgttttacgcgtggtagag
tccaaacgggtttctgaagagaaactagatattcctacaaactgtccaagttgtgactct
gacttgttgcactttgaagatgaagtggccctgcgttgtatcaatccgcgttgccctgct
caaatcatggaaggtttgattcactttgcctctcgagatgctatgaatattacaggcctt
ggtccatctattgttgagaagctttttgctgccaatctagtcaaggatgtggcggatatt
taccgattacaagaagaagatttccttcttttagagggggtcaaggaaaagtctgcttct
aaactgtatcaggccattcaagcatctaaggaaaattctgccgagaagctcttatttggt
ttgggaattcgccatgtaggaagcaaggccagtcagctcttacttcaacatttccattca
attgaaaatctggctcaggcagatccagaggaagtggctagtattgaaagtctgggtggc
gtgattgccaaaagtctccagacttattttgcgacagaaggctctgaaattctcttcaga
gaattgaaagaagctggggtcaatttggattataaaggtcagacagtagtagcggatgca
gccttgtcaggcttgaccgtggtattgactggaaaattagaacgtctcaagcgctcagaa
gctaaaagtaaactcgaaagtctgggtgcaaaagtaacaggcagtgtttctaaaaagacc
gatcttgttgttgcaggagcagatgctggaagtaaacttcaaaaggcacaagaacttggt
attgaggttagagacgaggcatggctagaaagtttgtaa
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