KEGG   Sphingomonas panacis: AWL63_06920
Entry
AWL63_06920       CDS       T04760                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
span  Sphingomonas panacis
Pathway
span03030  DNA replication
span03410  Base excision repair
span03420  Nucleotide excision repair
span03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:span00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AWL63_06920
   03410 Base excision repair
    AWL63_06920
   03420 Nucleotide excision repair
    AWL63_06920
   03430 Mismatch repair
    AWL63_06920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:span03032]
    AWL63_06920
   03400 DNA repair and recombination proteins [BR:span03400]
    AWL63_06920
Enzymes [BR:span01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AWL63_06920
DNA replication proteins [BR:span03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AWL63_06920
DNA repair and recombination proteins [BR:span03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AWL63_06920
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AWL63_06920
   MMR (mismatch excision repair)
    DNA ligase
     AWL63_06920
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AWL63_06920
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT DUF2990 Nlig-Ia
Other DBs
NCBI-ProteinID: AOH83740
UniProt: A0A1B3Z8I2
LinkDB
Position
complement(1551182..1553332)
AA seq 716 aa
MSTPLPDTEAPETEAEAAAELASLAAEIAHHNRRYHTEDAPEISDAAYDALVRRNAAIEA
AFPQLVRADSPSVQVGAAPSGHLAKVAHARPMFSLDNAFSDEEVADFLGRVRRYLKLADH
DAVALTAEPKIDGLSCSIRYEQHRLVRALTRGDGQIGEDVTANVRTIADIPECLPDGAPD
IFEVRGEVYMAKEDFAALNARLLAEAEAAGKDARQFANPRNAAAGSLRQKDAAVTRERPL
RFFAWGWGETSDLPGETQSAVIAAIRDWGFPVAAAFRPGGTLEDALATYKAIEAERADLS
FDIDGVVYKVDRLDWQQRLGFVGRAPRWGLAHKFPAQQAQTTLERIDIQVGRTGKLTPVA
RLTPVTVGGVVVTNATLHNADEIARLNVWPGDRVVLQRAGDVIPQIVENLSRDESRGSWP
FPTHCPICESESVREDEEIDIRCTGGLICPAQRLERLKHFVSRGALDIEGLGEKTLEEFI
ALGWITEPADIFRLAKHRDALLGREGWKDKSVENLLDAIEAKRAPDPVRLLFGLGIRHIG
VVTARDLLRRYHTLPEVQALADTVIALRDGMTPALAEEPRKFRNRVDKAVAEHIGVENVG
AAVGNALADFFHEPHNRTVWTDLLGEVTPPAFAQDTRESPVTGKTIVFTGTLETMSRDEA
KAQAESLGARVAGSVSAKTDLVVAGPGAGSKLKKASDLGVEVVDEAGWAALVAGAI
NT seq 2151 nt   +upstreamnt  +downstreamnt
atgtcgacaccgctgcccgataccgaagcccccgagaccgaagccgaagccgctgcggag
cttgcgagcctcgccgccgagatcgcgcaccacaaccgccgctatcacaccgaagacgcg
cccgagatttcggatgccgcctatgatgctttggtgcgccgcaacgccgcgatcgaagcg
gcctttccgcagctcgtccgcgccgattcgccgtcggttcaggtcggcgccgcgccatcc
gggcatctcgccaaggtagcgcatgcacggccgatgttcagcctcgacaatgcgttcagc
gacgaggaggtggcggacttcctcggtcgtgtgcggcgctatctcaagcttgccgaccac
gacgcagtcgcgctcaccgccgaacccaagatcgacggcctgtcctgctcgatccgctac
gagcagcaccgcctcgtccgcgcgctgacacgcggcgacgggcagatcggcgaggatgtc
accgccaacgtccgcaccatcgccgacattcccgagtgcctgcccgatggcgcacccgac
attttcgaggtgcgcggcgaggtgtatatggcaaaagaggatttcgccgcgttgaacgcg
cggctgctcgccgaggcggaagcggctggcaaggacgcgcgccagttcgccaacccgcgc
aacgccgccgccggatcgctccgccagaaggacgccgccgtgacgcgggagcgcccgttg
cggtttttcgcctggggctggggcgaaacctcggacctgcccggcgaaacgcaaagcgcg
gtgatcgccgcgatccgcgactggggttttccggtcgccgccgctttccgcccgggcggc
acgctggaggatgcactcgccacctacaaggcgatagaggccgagcgcgccgacctgtca
ttcgatatcgacggcgtggtctacaaggtcgaccggctcgactggcagcagcggctcggc
ttcgtcgggcgcgcgccgcgctgggggctcgcgcacaaattccccgcgcagcaagcgcag
accacgctggagcggatcgacatccaggtcggccgcaccggcaagctcacccccgtcgcg
cggctcacgccggtcaccgtcggcggcgtcgtcgtcaccaacgcgacgctgcacaatgcc
gacgagatcgcgcggctcaacgtgtggccgggcgaccgcgtggtgttgcagcgcgccggc
gacgtcatcccgcagatcgtcgagaacctgtcgcgcgacgagtcgcgtgggagctggccg
ttcccgacgcattgcccgatctgcgagtccgagtcggtgcgcgaggacgaggagatcgac
atccgctgcaccggcgggctgatctgcccggcgcagcggctcgaacggctcaagcatttc
gtttcgcgcggggcactcgacatcgaggggctcggcgagaagacgcttgaggaattcatc
gcactcggctggatcaccgaacccgccgacatcttccggctcgccaagcatcgcgacgcg
ctgctcggacgcgagggatggaaggacaaatcggtcgagaacctgctcgacgcgatcgaa
gccaagcgcgcgcccgatccggtgcggctgctgttcgggctcggcatccgccacatcggc
gtcgtcaccgcgcgcgacctgttgcggcgctaccacacgctgcccgaggtccaggcattg
gccgacacggtgatcgcgctgcgcgacggcatgacgccggcgctggccgaggagccgcgc
aaattccgcaaccgcgtcgacaaggcggtcgccgagcatatcggcgtcgagaatgtcggc
gcggcggtcggcaacgcgctcgccgacttcttccacgaaccccacaaccgcacggtgtgg
accgatctgctcggcgaggtcacgccgccggccttcgcgcaggatacgcgcgagtcgccc
gtcaccggcaagacgatcgtcttcaccggcacgctcgagacgatgagccgcgacgaagcc
aaggcgcaggccgagtcgcttggcgcgcgcgtcgcgggctcggtttcggccaagaccgat
ctcgtcgtggcggggccgggtgctggatcgaaactgaagaaggcgagcgacctcggggtc
gaagtggtcgacgaagctggctgggccgcactggtcgcgggtgcgatctaa

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