Saccharomyces paradoxus: SPAR_F00350
Help
Entry
SPAR_F00350 CDS
T08193
Name
(RefSeq) Caf16
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
spao
Saccharomyces paradoxus
Pathway
spao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPAR_F00350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spao03019
]
SPAR_F00350
Messenger RNA biogenesis [BR:
spao03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SPAR_F00350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
SMC_N
AAA_29
AAA_18
AAA_15
AAA_23
Dynamin_N
RsgA_GTPase
AAA_24
AAA_27
ORC-CDC6-like
Motif
Other DBs
NCBI-GeneID:
54630301
NCBI-ProteinID:
XP_033766039
UniProt:
A0A8B8UQL5
LinkDB
All DBs
Position
VI:complement(99733..100602)
Genome browser
AA seq
289 aa
AA seq
DB search
MVSQFAIEVRNLTYKFKESSDPSVIDIDLEIPWNTRSLVVGANGAGKSTLLKLLSGKHLC
LDGKIMVNGLDPFSPLSMNQVDDDESVEDSTNYQTTTYLGTEWCHMSIINRDIGVLELLE
SIGFDHFRERGERLVRILDIDVRWRMHRLSDGQKRRVQLAMGLLKPWRVLLLDEVTVDLD
VIARARLLEFLKWETETRRCSVVYATHIFDGLAKWPNQVYHMKSGKIVNKLDYLKDVEFS
EVVNAKVNGQVAFEDDNNKVVISKVNSLHPLALEWLKRDNQIPDKEIGI
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atggtttcccaatttgctattgaagtacgtaatttaacgtacaaatttaaggaaagctct
gatccgtcagttattgatatcgatctcgaaatcccatggaatacaaggtctttagtagtg
ggtgccaatggtgctggtaaatccacccttttgaaattactaagtggtaagcatctttgt
ctcgatggcaagatcatggtcaatggtcttgatccattcagtcccctatctatgaaccaa
gtagacgatgacgaaagtgttgaagattcgacaaactaccaaacaaccacttatctaggc
acggaatggtgccacatgagcatcattaacagggatattggcgtcttggaattattggaa
agtattgggtttgatcatttcagagaaagaggtgaaagattagttagaattctggacatc
gatgtacgttggagaatgcacaggttaagtgacgggcaaaagagaagagtgcaattagcc
atgggacttttgaaaccatggagagttttactacttgacgaagtcactgtggatctcgac
gttattgccagagcaagactactagagtttttaaagtgggagacagaaaccagaagatgt
tcagtggtttacgctacacatatttttgacggtttagccaagtggcccaatcaagtgtac
catatgaaatcaggtaagatcgtaaataagttagattatttgaaagatgtggagttttct
gaagtagtcaacgccaaagttaatggacaagtggcctttgaggacgacaacaataaggtt
gttattagcaaggtgaacagcttgcatccattggcactagaatggttgaaacgtgataac
caaattcctgataaagagataggtatatag
DBGET
integrated database retrieval system
