Staphylococcus pasteuri: STP1_0424
Help
Entry
STP1_0424 CDS
T02889
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spas
Staphylococcus pasteuri
Pathway
spas03030
DNA replication
spas03410
Base excision repair
spas03420
Nucleotide excision repair
spas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STP1_0424
03410 Base excision repair
STP1_0424
03420 Nucleotide excision repair
STP1_0424
03430 Mismatch repair
STP1_0424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spas03032
]
STP1_0424
03400 DNA repair and recombination proteins [BR:
spas03400
]
STP1_0424
Enzymes [BR:
spas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
STP1_0424
DNA replication proteins [BR:
spas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
STP1_0424
DNA repair and recombination proteins [BR:
spas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
STP1_0424
NER (nucleotide excision repair)
GGR (global genome repair) factors
STP1_0424
MMR (mismatch excision repair)
DNA ligase
STP1_0424
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STP1_0424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
Zn_ribbon_NUD
PTCB-BRCT
HHH
W2
zf-IS66
DUF7575
Motif
Other DBs
NCBI-ProteinID:
AGZ24735
LinkDB
All DBs
Position
complement(485581..487587)
Genome browser
AA seq
668 aa
AA seq
DB search
MSELQNRVDELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIHIEEEHPEFKTPDSPTV
RVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRENIGKVEYMCELKIDGLAVSL
KYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLNFEVRGEAYMPRKSFMNLNE
EKEKTGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSINDFTDFEATTQSGALDELD
QLGFKTNHERERVSDIDDVLKYIEKWTAERETLPYDIDGIVIKVNDLEQQDEMGFTQKSP
RWAIAYKFPAEEVVTELLDIELSIGRTGVVTPTAILEPVRVAGTTVSRASLHNEDLIHER
DIRIGDSVVVKKAGDIIPEVVKSIIDRRPEDAETYHMPTHCPSCGHELVRIEGEVALRCI
NPKCQAQLIEGLIHFVSRQAMNIDGLGTKIIQQLYENDLIKDVADIFYLEEEDLLPLERM
GSKKVENLLEAIQQAKSQSLEHLLFGLGIRHLGVKASRVLAEKYETMDRLLTVTEEELIA
IHDIGGKLAQSVVTYLENDDIRALIQKLKDKDVNMTYKGVKTTEIEGHPDFSGKTIVLTG
KLEQMTRNEASQWLQMQGAKVTNSVTKSTDILIAGADAGSKLTKAEKFGTEIWTEEEFAT
KQNEINNE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaattacaaaatcgtgtagatgaattacatgatttattaaaccaatatagttat
gaatactatgttcaagataatccatcagtgccggatagtgaatacgataaattattacat
gagctcattcatattgaagaagaacatcctgaatttaagacaccagattcacctacagtt
cgagtaggtggtgaagcgcaatcatcttttgaaaaagtgaatcatgatacacctatgctt
agtttaggtaatgcatttaacgaggaagatttaagaaagtttgatcaacgtatacgagaa
aatattggtaaagtagaatatatgtgtgaacttaaaatagatggcttagctgtctcttta
aaatatgaaaatggccgttttgtacaaggattaactcgtggtgatggtacgacaggtgaa
gatataaccgaaaatttaagaacgattcatgccattccattaaaaattaaagaaccactt
aattttgaagttcgtggagaagcatatatgcctagaaaatcatttatgaatttaaatgaa
gaaaaggaaaagacgggcgagcaaccttttgcaaatcctcgtaatgcagcagcagggtca
ttacgccaactagactctaagctagcggctaaaagaaagttaagtgttttcttatatagt
attaacgattttactgactttgaagctacgacacaaagtggtgcattagatgaattggat
caattagggtttaagacaaatcacgaacgtgagagagtatctgatatagacgacgttctt
aaatatattgaaaaatggacagctgaaagagaaacattaccttatgatatagatggtata
gttatcaaagttaacgatttggaacaacaagatgaaatgggattcactcaaaaatcacct
cgatgggcaattgcttataagtttcctgctgaagaggttgttacagagttattagacatt
gaattaagtataggacgtacaggtgtggttacacctacggcaatcctcgaaccagtgaga
gtagcaggtacgactgtatcaagagcttcattacataatgaggatttaatacacgaaaga
gatatcagaattggtgatagtgttgttgtcaaaaaagcaggcgatattataccagaagtt
gtgaaaagtattattgaccgtcgaccagaagatgctgaaacttatcatatgccgacccat
tgtccaagttgtggtcatgagttagtaagaatagaaggcgaagtggctttacgatgtatt
aatcctaaatgccaagctcagttaatcgaaggccttattcactttgtttcacgtcaagct
atgaatattgatggtttaggtaccaaaattattcaacagttatatgaaaatgatttgatc
aaagatgttgctgatatcttttatttggaagaagaagatttattacctcttgaacgtatg
ggaagtaaaaaagttgaaaacttattagaagctatacaacaagctaaatcacaatcttta
gaacatttattatttggtttaggcattcgtcatttaggtgtaaaagcaagtcgtgttcta
gcggaaaaatatgaaactatggatcgtcttttgacagtaactgaagaagaattaatcgct
attcatgatattggtggtaaattagctcaatcagtagtcacttatttagaaaatgatgac
attcgtgcattaattcaaaaattaaaagataaagatgttaatatgacatataaaggtgtt
aaaactactgaaattgaaggacatccagattttagtggtaagacaattgtattaactggt
aaattagagcaaatgacacgtaatgaagcttcccagtggttacaaatgcaaggtgcaaaa
gtgacgaacagtgtcactaagagtacagacatattaattgctggagctgatgcaggttct
aaattaactaaagcagaaaagtttggaacggaaatatggactgaagaagaatttgcaaca
aaacaaaatgaaataaataatgagtga
DBGET
integrated database retrieval system
