Streptomyces parvulus: Spa2297_23245
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Entry
Spa2297_23245 CDS
T04685
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spav
Streptomyces parvulus
Pathway
spav03030
DNA replication
spav03410
Base excision repair
spav03420
Nucleotide excision repair
spav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Spa2297_23245
03410 Base excision repair
Spa2297_23245
03420 Nucleotide excision repair
Spa2297_23245
03430 Mismatch repair
Spa2297_23245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spav03032
]
Spa2297_23245
03400 DNA repair and recombination proteins [BR:
spav03400
]
Spa2297_23245
Enzymes [BR:
spav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Spa2297_23245
DNA replication proteins [BR:
spav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Spa2297_23245
DNA repair and recombination proteins [BR:
spav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Spa2297_23245
NER (nucleotide excision repair)
GGR (global genome repair) factors
Spa2297_23245
MMR (mismatch excision repair)
DNA ligase
Spa2297_23245
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Spa2297_23245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ANJ11650
UniProt:
A0A191V9Q1
LinkDB
All DBs
Position
5111779..5113974
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAETTSVPAQAREQHAQLAEQIEEHRFRYYVKDAPVVSDADFDRLLRTLEELEER
HPELRTPESPTQKVAGSYETEFTAVAHPTRMLSLDNTFNDEELAAWTERIARELGEQEYH
FLCELKVDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPERLRGDEVPDRVE
IRGEVYFPMEKFQELNTRLNEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGV
LEGYSGMTRLSQAYDLLKSWGLPTSPHNRVVDGLEGVREFIAYYGENRHSVAHEIDGVVV
KLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPAECP
ECGTPLRAMKEGDIDLRCPNARRCPAQLRGRLSYLAGRECLDIEHFGDVVAAALTGPLEP
AEPPLADEGDLFDLTVEKLLPIKAYVLDQDSGLPKRDPKTGEEKIVTVFANKEGEPKKNT
LSLLAHIEEAKTRPLARFINGLSIRYVGPVAAQALAREFRSIDRIEQATEEELANTDGVG
ATIATALKEWFAEDWHREIVRKWKAAGVPLEDRSSGEDEGPRPLEGLTVVVTGTLDNFTR
DGAKDALQSRGAKVTGSVSKKTSFVVVGDSPGSKYDKAMQLKVPVLDEDGFTVLLEQGAE
AAADVALSAEE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaggcggagacgacaagcgtgccggctcaggcgcgggagcagcac
gcgcagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgccccc
gtcgtcagcgacgcggacttcgaccggctgctgcgcaccctggaggagctggaggagcgc
cacccggagctgcgcacccccgagtccccgacccagaaggtcgccggctcctacgagacc
gagttcacggccgtggcccaccccacgcgcatgctctccctcgacaacaccttcaacgac
gaggaactggccgcctggaccgagcgcatcgccagggagctgggcgagcaggagtaccac
ttcctgtgcgagctgaaggtcgacggcctcgccgtcaacctcacctacgagcgcggccgc
ctggtccgcgccgccacccgcggtgacggccgcaccggcgaggacatcacgcccaacgtc
cgcaccatcgccgagatccccgagcggctccggggcgacgaggtgcccgaccgggtggag
atccgcggcgaggtctacttcccgatggagaagttccaggaactgaacacccggttgaac
gaggcgggcgacaagcccttcgccaacccccgcaacgcggccgccggttcgctgcgccag
aaggacccgcgcgtcaccgccacccgcccgctgcacatggtggtccacggcatcggcgtc
ctggagggctactcgggcatgacccgcctctcccaggcgtacgacctgctgaagagctgg
ggcctgcccacctccccgcacaacagggtggtcgacggcctcgaaggcgtccgcgagttc
atcgcgtactacggcgagaaccgccactccgtggcgcacgagatcgacggcgtcgtcgtc
aagctcgacgagatccgcctccagggccggctcggctccacggcccgcgccccccgctgg
gccatcgcctacaagtacgcgccggaggaggtcaacaccaagctcgtcgacatcaaggtc
ggcgtcggccgcaccggccgggtcacgccgtacgcgcaggtcgagccggtcaccgtggcc
ggcagcgaggtcgagttcgccacgctgcacaaccaggacgtggtcaaggccaagggcgtg
ctcatcggcgacaccgtggtgctgcgcaaggccggcgacgtcatcccggagatcctcggc
ccggtcgccgacctcagggacggcagcgagcgggagttcgtgatgccggccgagtgcccc
gagtgcggtacgccgctgcgggccatgaaggagggcgacatcgacctccgctgccccaac
gcccgccgatgccccgcccagttgcgcggacgcctgtcctatctcgccggccgcgagtgc
ctcgacatcgagcacttcggcgacgtcgtggccgccgccctcaccggtccgctcgaaccg
gccgagccgccgctggccgacgagggcgacctcttcgacctcaccgtcgagaagctgctg
cccatcaaggcgtacgtcctcgaccaggacagcggactgcccaagcgcgacccgaagacc
ggcgaggagaagatcgtcacggtcttcgccaacaaggagggcgagccgaagaagaacacc
ctctcgctgctcgcgcacatcgaggaggccaagacccggccgctcgcccgcttcatcaac
ggcctctccatccggtacgtgggacccgtcgccgcccaggccctggcccgcgagttccgc
tccatcgaccgcatcgagcaggccaccgaggaggagctggcgaacacggacggcgtgggc
gccaccatcgccaccgccctcaaggagtggttcgccgaggactggcaccgcgagatcgtg
cgcaagtggaaggcggccggagtcccgctggaggaccgttcgagcggcgaggacgagggc
ccccgccccctcgaagggctcaccgtcgtcgtcaccggcaccctggacaacttcacccgg
gacggcgccaaggacgccctccagagcaggggcgccaaggtgaccggttcggtgtccaag
aagacgtccttcgtcgtcgtcggtgacagtcccgggtcgaagtacgacaaggcgatgcag
ctgaaggttccggttctggacgaggacggcttcaccgtcctgctcgaacagggggccgaa
gcggcggccgacgtcgcactttcggctgaggaatag
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