Streptomyces parvus: ABXI76_04355
Help
Entry
ABXI76_04355 CDS
T10675
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spaz Streptomyces parvus
Pathway
spaz03030
DNA replication
spaz03410
Base excision repair
spaz03420
Nucleotide excision repair
spaz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABXI76_04355 (ligA)
03410 Base excision repair
ABXI76_04355 (ligA)
03420 Nucleotide excision repair
ABXI76_04355 (ligA)
03430 Mismatch repair
ABXI76_04355 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spaz03032
]
ABXI76_04355 (ligA)
03400 DNA repair and recombination proteins [BR:
spaz03400
]
ABXI76_04355 (ligA)
Enzymes [BR:
spaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABXI76_04355 (ligA)
DNA replication proteins [BR:
spaz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABXI76_04355 (ligA)
DNA repair and recombination proteins [BR:
spaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABXI76_04355 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABXI76_04355 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABXI76_04355 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABXI76_04355 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
HHH_2
BRCT
PTCB-BRCT
HHH
Nlig-Ia
CwsA
UPF0758_N
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
XCM28705
LinkDB
All DBs
Position
complement(1111331..1113475)
Genome browser
AA seq
714 aa
AA seq
DB search
MVVMTNSAAVLADAAAYAAAVEEASVAAAAYYATGESGLDDDAYDRLARGIAAYEADHPE
EVLAASPTGKVAGGAAVGDVPHTVPMLSLDNVFSAEQFATWTASLERRIGRPVTAWSVEP
KLDGLAVAARYRDGRFERLITRGDGTAGEDVSHAAGAVVGLPERLAEPVTIEVRGEILMT
NDQFDQGNAIRTEHGGAPFANPRNGAAGTLRAKDRAYRVETTFFAYGALPLPDSGELGET
LAELPHSEVLSYVAGLGVHTAAGTDVAPVLAATVEEVQARVDAIGSLRAALPFGIDGIVI
KADLAADQREAGSGTRAPRWAIAYKLPAVEKITRLVSVEWNVGRTGIIAPRAVLEPVEID
GSTVGYATLHNPADITRRDLRLGDQVMVYKAGDIIPRIEAPVVHLRTGDETPIDFPESCP
QCGSAIDTSEQRWRCTRGRNCRLVASVSYAAGRDQLDIEGLGATRVVQLVDAGLVADFAD
LFTLERAQLLALDRMGETSTDNLLAAIETARTRPLSRVFCALGVRGTGRSMSRRIARHFA
TMDRIVAADVDTLQQVDGIGKEKAAAVVAELVELAPLIDKLVAAGVNMTEPGATPPPEPG
TEEAAGAGAGAGADAEAGGDGGTGPTLPLAGMTVVVTGAMTGALEKLSRNQMNELIERAG
GKSSSSVSKRTSLLVAGDKAGSKRTKAEDLGVRIAVPEEFAELVGAFLAAGENA
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggtggtcatgacgaactcagctgctgtgctcgccgatgccgccgcctatgccgccgcg
gtggaagaggcctccgtcgccgccgccgcgtactacgccacgggcgagagcgggttggac
gacgacgcctacgaccggctggcgcgcggcatagccgcgtacgaggcagaccacccggag
gaggtgctcgccgcctcgccgaccggcaaggtcgcgggcggggccgccgtcggcgacgtg
ccgcacacggttcccatgctctccctggacaacgtgttctcggccgagcagttcgcgacc
tggaccgcgtcgctggagcggcgcatcggcagacccgtgaccgcgtggagcgtcgagccg
aagctcgacggcctggcggtcgccgcgcgctaccgggacggcaggttcgagcggctcatc
acccggggcgacggcacggcgggcgaggacgtctcgcacgcggcgggcgccgtcgtcgga
ctgccggagcggctggccgagccggtcaccatcgaggtgcgcggcgagatcctcatgacg
aacgaccagttcgaccagggcaacgcgatccgtacggaacacggcggcgcccccttcgcc
aacccgcgcaacggggcggcgggcaccctgcgcgccaaggaccgcgcctaccgggtggag
acgaccttcttcgcctacggcgcactgccgctgcccgactccggggagctcggtgagacc
ctcgccgaactgccccacagcgaggtcctgtcgtacgtcgccggcctcggcgtgcacacg
gccgcgggcacggacgtcgcgccggtcctggccgccacagtcgaggaggttcaggcgcgg
gtggacgccataggctccctgcgcgccgcgctgccgttcggcatcgacggcatcgtgatc
aaggccgacctggcggccgaccagcgcgaggcgggctccggcacccgcgcgccccgctgg
gccatcgcctacaagctgcccgccgtggagaagatcacccgcctggtgtccgtcgagtgg
aacgtcgggcgcacaggcatcatcgcgccgcgtgccgtcctggagcccgtggagatcgac
ggctccaccgtcggttatgccaccctccacaaccccgccgacatcacccgccgtgacctg
cggctgggggaccaggtcatggtctacaaggcgggcgacatcatcccgcgcatcgaggcc
cccgtcgtccacctgcgcaccggcgacgagacacccatcgacttccccgagagctgcccg
cagtgcggctccgccatcgacacgagcgaacagcgctggcgctgcacccggggtcgcaac
tgccgcctcgtcgcctccgtctcgtatgcggcgggccgcgaccagctcgacatcgagggc
ctcggcgccacccgggtcgtccagctcgtcgatgccggtctcgtcgccgacttcgccgac
ctcttcaccctggagcgcgcacagctgctcgccctcgaccggatgggcgagacctccacg
gacaacctcctggcggccatcgaaaccgcccgcacccggccgctgtcccgggtcttctgc
gccttgggcgtacggggcacggggcgctccatgtcacgccgcatcgcccggcacttcgcc
accatggaccggatcgtcgccgccgacgtggacacgctccagcaggtggacggcatcggc
aaggagaaggccgccgcggtggtcgcggagctggtggagctggcaccgctgatcgacaag
ctcgtcgcggccggggtgaacatgaccgagccgggcgccaccccgcccccggagcccggg
acggaggaggcggccggggccggggccggggccggggcggacgcggaggccggtggcgac
gggggcaccggccccacgctgcctctcgcggggatgaccgtggtggtgacgggcgccatg
accggggcgctggagaagctgtcccgcaaccagatgaacgagctgatcgagcgggcgggc
ggaaagtcgtcctccagcgtctccaagcgcaccagcctgctggtcgccggggacaaggcc
gggtccaagcgcaccaaggcggaggacctgggggtccggatcgcggtgccggaggagttc
gcggagctcgtcggcgcgttcctggcggcgggggagaacgcctga
DBGET
integrated database retrieval system
