Shewanella putrefaciens CN-32: Sputcn32_2364
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Entry
Sputcn32_2364 CDS
T00513
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spc
Shewanella putrefaciens CN-32
Pathway
spc03030
DNA replication
spc03410
Base excision repair
spc03420
Nucleotide excision repair
spc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sputcn32_2364
03410 Base excision repair
Sputcn32_2364
03420 Nucleotide excision repair
Sputcn32_2364
03430 Mismatch repair
Sputcn32_2364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spc03032
]
Sputcn32_2364
03400 DNA repair and recombination proteins [BR:
spc03400
]
Sputcn32_2364
Enzymes [BR:
spc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Sputcn32_2364
DNA replication proteins [BR:
spc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sputcn32_2364
DNA repair and recombination proteins [BR:
spc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Sputcn32_2364
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sputcn32_2364
MMR (mismatch excision repair)
DNA ligase
Sputcn32_2364
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sputcn32_2364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
DZR_2
DUF4796_N
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
ABP76085
UniProt:
A4Y802
LinkDB
All DBs
Position
complement(2729465..2731522)
Genome browser
AA seq
685 aa
AA seq
DB search
MQDIQLDKLLSADMSPENAQQVMQALSQSLNEHNIRYYVDDAPTITDSEYDRLMQCLIKL
EAQFPQFIVADSPTQRVGGLALAKFDQITHLKPMLSLDNAFGEADFSAFHKRVTDKVGEV
SFCCEPKLDGLAVSILYRHGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVV
EVRGEAFMPKAAFEALNERARAKDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALG
VVEPDSYSLGKTHYEQLQQLKSWGLPVSNEIKVCDELDQVFDYYKDILTRRSDLPFEIDG
VVMKVNDIAQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPV
FVGGVTVSNATLHNADEIERLGIKIGDTVIIRRAGDVIPQIVAIVPERRPETATNIVFPH
NCPVCGSLVERLEGEAVARCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKE
LVQSPADLFKLTASMMTMLDRMGMKSATNLAAAIEAAKTTTLARFLYALGIREVGEATAA
NLAAHFASLDALRVATVEQLTAVEDVGVVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAI
EAPSADAQPLKGQTWVLTGTLNQLNRNDAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSK
LAKAQELGVKVIDEEALLALFAANR
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacattcaactcgataaactcctttctgccgatatgtcacctgagaatgcacag
caggtgatgcaggcccttagccaatcgctgaacgaacacaatattcgttactatgtggat
gatgcgccaactattactgattctgagtatgataggttgatgcaatgcttgataaagctc
gaagcgcagttccctcagtttatcgttgccgactcgccaacccagcgagtcggcgggctg
gcgctggccaagtttgatcaaatcactcaccttaagcctatgttgagcttagataacgct
ttcggtgaagcggacttcagcgcttttcataagcgcgttaccgataaagtcggtgaggtg
agtttttgttgtgaacctaaactcgatggtttagctgttagtattttgtatcgccatggt
gtactcgagcgcgcagcgacccgtggcgatggaacagtaggtgaagacatcactgaaaat
gtgaagaccattaaatccattccacttaaattgcgtggcaatgattttcctgaagtggtt
gaagttcgcggtgaagcttttatgcccaaggctgcttttgaggctctcaatgagcgtgcg
cgcgcaaaggatgaaaagctgtttgtcaatccacgtaacgcggcggcggggagtttacgt
caactcgacagtaaaattacggcctctcgctcacttgctttttatgcttatgcattgggt
gtggttgagcccgattcttattcgttgggcaaaacccactatgaacagttacagcagcta
aaatcttggggtttacccgttagcaacgaaatcaaagtgtgcgatgagttagatcaagta
ttcgactactacaaagatattcttacccgccgcagcgatttaccctttgaaatcgatggt
gtggtgatgaaagttaacgatattgcccaacagcaacgcttaggttttgtggctaaatcc
ccccgttgggccattgcctataagtttcccgctcaagaggaaatgacattacttgaaggt
gtcgattttcaagtagggcgtaccggtgccgtcacccctgttgcacgcttaaaaccagta
tttgtaggcggggtaactgtttctaatgccacactacacaatgccgatgagattgagcgt
ttaggcattaaaatcggtgatactgtgattattcgccgtgctggcgatgttatcccacaa
attgtggcgatagtgcccgaaagacgtcctgaaacggcgactaatatcgtctttccgcac
aactgtcctgtttgcggcagtttagtcgagcgtcttgaaggagaggcggtggctcgctgc
agcggcggtttgttttgtgaggcgcagcgtaaagaagcgattaagcatttcgcatcccgc
aaggcgttagatatcgatggtatgggcgacaaagtcgtcgagcaattgattgataaagaa
ctcgtccaaagtcctgcagatttgtttaagcttaccgcttcaatgatgactatgctcgat
cgcatgggcatgaagtcggcaaccaatttagcggcagcgattgaagcggccaaaaccaca
acacttgcacgtttcttatatgccttaggcattcgtgaagtgggcgaggcgacggcggca
aaccttgcggcgcactttgccagtttagatgcgctgcgcgttgcgactgttgagcagtta
actgcagtggaagatgtgggcgttgttgttgctcagcatgtagcacatttttttgctcag
ccccataatcttgaagtgattgatgccttgattgcagcaggagtccactggcctgctatt
gaagcgccgagcgcggatgcacaaccccttaaaggtcagacttgggtattaacgggcacc
ttaaaccaacttaatcgtaacgatgctaaggcgcagttgcagacccttggggcgaaagtg
gctggcagtgtttccaaaaataccgattgtttagtggcaggtgaggcggcaggttcaaaa
ctggctaaagcgcaggaactaggggtaaaggtgattgatgaagaggcgctattagcactc
ttcgcggctaatcgctag
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