Sphingomonas sp. CL5.1: F9288_19025
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Entry
F9288_19025 CDS
T11042
Symbol
ligA
Name
(Genbank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spcl Sphingomonas sp. CL5.1
Pathway
spcl03030
DNA replication
spcl03410
Base excision repair
spcl03420
Nucleotide excision repair
spcl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F9288_19025 (ligA)
03410 Base excision repair
F9288_19025 (ligA)
03420 Nucleotide excision repair
F9288_19025 (ligA)
03430 Mismatch repair
F9288_19025 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spcl03032
]
F9288_19025 (ligA)
03400 DNA repair and recombination proteins [BR:
spcl03400
]
F9288_19025 (ligA)
Enzymes [BR:
spcl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F9288_19025 (ligA)
DNA replication proteins [BR:
spcl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F9288_19025 (ligA)
DNA repair and recombination proteins [BR:
spcl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F9288_19025 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F9288_19025 (ligA)
MMR (mismatch excision repair)
DNA ligase
F9288_19025 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F9288_19025 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
RHA1_ro05818_N
Motif
Other DBs
NCBI-ProteinID:
QKS01483
UniProt:
A0A6N0X0C2
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All DBs
Position
3955536..3957662
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AA seq
708 aa
AA seq
DB search
MTALPSDDPAAAAELERLAREIAHHNRRYHTEDAPEISDADYDALVRCNNAIEAAFPHLI
RADSPSRLVGAAPASHLAKVRHAKPMTSLDNAFSDEEVKEFVARVRRFLRLSDETPVTLT
AEPKIDGLSCSLRYEDRRLVQALTRGDGTTGEDVTANVATIADIPQSLPAGAPDVFEVRG
EVYMAKADFTALNARLAAEAAETGKEARQFANPRNAAAGSLRQKDAAVTASRPLRFLAHG
WGEVSALPGDTQLAVMEAIRGWGFPVADDLARVADAAAALARYRAIEAERADLPFDIDGV
VYKIDRLDWQERLGFVARAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVARLKPVT
VGGVVVSNATLHNADEIARLDAHPGDRVVVQRAGDVIPQIVENLSRQEGRAPWPFPTHCP
ECHSEAVREPGEVDWRCSGGLVCPAQQVERLRHFASRHALDIEGLGITNVESFFADGLIA
RPADIFRLTGEQLLARERWAEVSARNLIAAIDARRNPPLDRLLFALGIRHIGEVTARDLA
RRWQSWAAFRAMVQTGIEKRDSMLQAIGESDDKLLQRTAKELAAIADTKQVGPEVALALI
DFFAEEQNDEAVRDLLTQVTPADVTHETRASEVSGKTVVFTGTLETMSRDEAKAQAESLG
ARVAGSVSAKTDLVVAGPGAGSKAKKAADLGIRVVDEAGWQAIVAAAG
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctctcccctccgacgatcccgcagccgccgccgagcttgaacggctcgcgcgc
gagatcgcgcaccacaaccgccgctatcacaccgaggacgcgccggagatttccgacgcc
gattacgacgcgctcgtccgctgcaacaacgcgatcgaggcggccttcccgcacctgatc
cgcgccgattcgccctcgcgcctcgtcggcgcggcgcccgcctcgcatctcgccaaggtg
cgccacgcgaagccgatgaccagcctcgacaacgctttctccgacgaggaggtgaaggag
ttcgtcgcgcgcgtccgccgcttcctgcggctcagcgacgagacgccggtcacgctcacc
gccgagccgaagatcgacggcctctcctgctcgctccgctacgaggaccgccgcctcgtc
caggcgctgacgcgcggcgacggcacgaccggcgaggacgtcacagccaatgtcgcgacg
atcgcggatatcccgcaaagcctgcccgccggcgcaccggacgtgttcgaggtgcgcggc
gaggtctatatggcgaaggccgatttcaccgcgctcaacgcccggctcgcggccgaggcg
gcggagaccggcaaggaggcgcgccagttcgccaacccgcgcaacgccgccgccggctcg
ctgcgccagaaggacgccgccgtcaccgccagccgcccgctgcgcttcctcgcgcacggc
tggggcgaggtgtccgcgctgcccggcgatacgcagctcgcggtgatggaggcgatccgc
ggctggggtttcccggtcgccgacgatctcgcccgcgtcgcggacgccgccgccgcgctg
gcgcgctatcgcgcgatcgaggcggagcgcgccgacctgccgttcgacatcgacggcgtg
gtctacaagatcgaccggctcgactggcaggagcggctcggcttcgtcgcgcgcgcgccg
cgctgggcaatcgcgcacaaattccccgccgagcgcgcgcagaccacgctcgaagccatc
gacatccaggtcggccgcaccggcaagctcacccccgtcgcccgcctcaagcccgtgacg
gtgggcggcgtggtcgtctccaatgcgacgctgcacaatgccgacgagatcgcccggctc
gacgcgcatccaggcgaccgcgtggtcgtccagcgcgccggcgacgtgatcccgcagatc
gtcgagaacctgtcgcgccaggagggccgcgcgccatggcccttccccacccattgcccc
gaatgccattccgaggcggtgcgcgagccgggcgaggtcgactggcgctgttcgggcggc
ctcgtctgcccggcgcagcaggtcgagcggctgcggcatttcgcctcgcgccacgcgctc
gatatcgaggggctgggcatcaccaatgtcgagagcttcttcgccgacggcctgatcgcg
cggcccgccgatatcttccggctgaccggggagcagttgctcgcccgcgagcgctgggcg
gaggtgtcggcgcgcaacctgatcgcggcgatcgatgccaggcgcaacccgccgctcgac
cggctgctgttcgcgctcggcatccgccatatcggcgaggtgacggcgcgcgatctcgcc
cgccgctggcaaagctgggcggcgttccgcgcgatggtgcaaacgggaatcgagaaacgc
gattcgatgctccaggcgatcggcgagagcgatgacaagttgctccagcgcaccgccaag
gaactcgccgcgatcgccgataccaagcaggtcgggccggaggtggcgctcgcgctgatc
gacttcttcgccgaggagcagaatgacgaggcggttcgcgacctcctgacgcaggtgacg
ccggccgacgtgacccacgaaacccgcgcctcggaggtgtcgggcaagacggtggtgttc
accggcacgctggagacgatgagccgcgacgaggccaaggcgcaggccgaatcgctcggc
gcgcgcgtcgccggctcggtctccgccaagaccgacctcgtcgtcgccggccccggcgcg
ggatcgaaggcgaaaaaggccgccgacctcggcatccgcgtggtggacgaggccggctgg
caggcgatcgtcgccgcagcgggctga
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