Sphingobacterium sp. DR205: G6053_05585
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Entry
G6053_05585 CDS
T06466
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spdr
Sphingobacterium sp. DR205
Pathway
spdr03030
DNA replication
spdr03410
Base excision repair
spdr03420
Nucleotide excision repair
spdr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spdr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G6053_05585 (ligA)
03410 Base excision repair
G6053_05585 (ligA)
03420 Nucleotide excision repair
G6053_05585 (ligA)
03430 Mismatch repair
G6053_05585 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spdr03032
]
G6053_05585 (ligA)
03400 DNA repair and recombination proteins [BR:
spdr03400
]
G6053_05585 (ligA)
Enzymes [BR:
spdr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G6053_05585 (ligA)
DNA replication proteins [BR:
spdr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G6053_05585 (ligA)
DNA repair and recombination proteins [BR:
spdr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G6053_05585 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G6053_05585 (ligA)
MMR (mismatch excision repair)
DNA ligase
G6053_05585 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G6053_05585 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
Auto_anti-p27
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
QIH32392
UniProt:
A0A6G7BRD3
LinkDB
All DBs
Position
complement(1329049..1331073)
Genome browser
AA seq
674 aa
AA seq
DB search
MSVMDIEKKIKDLTAELNHYNYQYYVLADSLISDYDFDLKLKELEALERQYPAFADPNSP
TQRVGGDITSKFKTEKHRWPMLSLGNTYSQEELFDFDQRIRKIIGDQFEYVCELKFDGLS
ISLTYENGLLKKAVTRGDGTQGDVVTNNIKTIRSIPIRLKEGDYPSQFEIRGEIFMHKSA
FLRLNKEREENAEQTYANPRNFASGTIKLQDSAEVAKRPLDCFLYFLYCDNRTNLFHDHW
NSLAHVKSWGFHVCEHTKKCNSLADVFEFIDYWDTERHNLGYEIDGIVIKVNDYAQQEDL
GFTAKNPRWAISYKFKAERVETTLNTISYQVGRTGAVTPVANLQPVLLAGTTVKRASLHN
ANEIARLDLHQGDTVYVEKGGEIIPKIIGVNLEKRLPDTTAFIYPDSCPECGTTLIRQEG
EAVHYCPNETGCPPQIVGKMQHFIGRKMMDIEGMGDETVETFFRKGLLHNIVDIYGLKDH
QEDLQQLERFGQKSIDNMLAGIEKSKEKPFEKVLFSLGIRHVGETIAKKLAQHFKNIDAL
AQASTEEIEGVQDIGRRIAESVKEYLDNPIHQQQLISLRHYGLKLEIEEREIILASENLS
GKTFLISGVFADYSREQLAELIESNGGKMLSSISAKLNYLVAGDKMGPSKLAKAEKLGIP
MINEQDLLDLIHSK
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgatggatattgaaaaaaagataaaagacttaacagcagaactcaatcattat
aactatcaatactatgtattggcagatagtcttatttcagattatgacttcgatctcaag
ctaaaggaactcgaagcactggaacgtcaatatccagcgttcgctgatcctaactctccc
acacaacgcgttgggggtgacatcacctccaaattcaaaacagagaaacatcgttggccc
atgctttcgttgggcaatacctacagccaagaggagctttttgattttgatcaacggatc
cgaaagatcattggcgatcagtttgagtatgtttgtgaattaaaattcgacgggctttcc
ataagcctaacatatgaaaatggactactcaaaaaagcagttacccgtggggatggaact
caaggtgatgtggtgacaaacaatatcaaaacgatccgatccattccgatcagactcaaa
gagggtgactatcctagccagtttgaaatccggggcgagatatttatgcataaatctgcg
ttccttcgcctgaataaagaacgcgaagagaacgcggaacagacttatgccaatccacgc
aattttgcttcgggcacaataaaacttcaggattccgcggaggtagccaaaagaccttta
gattgttttctgtactttttatactgcgacaatagaaccaacctatttcatgatcactgg
aacagcttagcacatgtgaaaagctggggatttcatgtctgtgaacacacaaaaaaatgt
aattcactggcagatgtctttgaattcattgactattgggacaccgaacgacataatctc
ggctatgaaatcgacggtatcgttatcaaagtgaatgattatgcccaacaggaagattta
ggttttacggcgaagaacccaagatgggcgatatcctataaattcaaagcggaacgtgtt
gagacaacactcaataccattagctaccaagtagggcgtaccggcgcagtcacacctgta
gcaaatctccaacctgtcctgttagcaggaacgacggtcaaacgcgcctctttgcataac
gccaatgaaattgcccgtttagatttacatcagggcgataccgtctatgtagaaaaagga
ggcgaaattatccctaaaatcattggtgtcaaccttgaaaaaagattgccggatacaaca
gctttcatctacccggacagctgtccggaatgtggcacaacattaattagacaagagggc
gaagccgtgcattactgtcccaatgaaacgggatgtccaccacagatcgttggtaaaatg
caacattttatcggacgtaaaatgatggatatcgagggtatgggcgacgagacggtggag
actttcttcagaaaaggactattgcataacattgttgacatctacggcctaaaggaccat
caagaagacttacaacaattggagcgctttggtcaaaagtcaatcgacaatatgctggca
ggcatagaaaaatcaaaagaaaaaccctttgagaaggtattattctcgttgggaatacgt
catgtcggcgaaacaatcgcaaaaaaactagcgcagcattttaagaatattgatgccctt
gctcaggcatctacagaagaaatcgagggtgttcaggatatcggacgccgcatcgctgaa
agtgtcaaagaatatctggacaaccccattcatcagcaacagctcattagcttaagacat
tatggcttaaagctggaaattgaagaaagggaaattattctagccagtgaaaatctcagc
ggaaaaacgtttttgatttcaggtgtatttgcagattattccagagaacagctagcggaa
ttaatcgagagcaatggggggaaaatgctctcctccatttctgcaaaattgaattatctg
gtggcaggagataaaatggggccttccaaattagcgaaggcagagaaactgggcatcccg
atgattaatgagcaagatctattagaccttattcattccaaatag
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integrated database retrieval system
