Serratia proteamaculans: Spro_3444
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Entry
Spro_3444 CDS
T00595
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spe
Serratia proteamaculans
Pathway
spe03030
DNA replication
spe03410
Base excision repair
spe03420
Nucleotide excision repair
spe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Spro_3444
03410 Base excision repair
Spro_3444
03420 Nucleotide excision repair
Spro_3444
03430 Mismatch repair
Spro_3444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spe03032
]
Spro_3444
03400 DNA repair and recombination proteins [BR:
spe03400
]
Spro_3444
Enzymes [BR:
spe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Spro_3444
DNA replication proteins [BR:
spe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Spro_3444
DNA repair and recombination proteins [BR:
spe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Spro_3444
NER (nucleotide excision repair)
GGR (global genome repair) factors
Spro_3444
MMR (mismatch excision repair)
DNA ligase
Spro_3444
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Spro_3444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH
DZR_2
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ABV42542
UniProt:
A8GHF2
LinkDB
All DBs
Position
complement(3813527..3815548)
Genome browser
AA seq
673 aa
AA seq
DB search
MESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMGELRALESAHPELITADSPTQ
RVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSDPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGDNIPRRLEVRGEVFMPQAG
FEQMNEEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHW
QRLMQFKDWGLPVSDRAKRCTGSDEVLAFYRQVEQDRTQLGFDIDGVVVKIDDIDLQETL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVLVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVIAERRPADAREILFPQHCPVCGSDVERVEG
EAVARCTGGLICAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKEYVKNPADLFRLSAG
ILTGLDRMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGEATAANLAAHFGTLDKLLA
ADIEALKEVPEVGEIVAKHTRHFLDEELNQQVIQELVSDEIGINWPAPVVIVAEEIDSPF
AGKTVVLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIE
VIDEAEMIRLLGA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaacaaatcaatcaactacgaacctcactgcgccatcacgaatat
caataccatgtgctggacgcgccggaagtaccggatgcggaatacgaccgcctgatgggt
gaactgcgtgccctggaaagcgcacatccggagctgatcaccgccgattctccgacccag
cgcgtgggtgccgccccgctggcggcgttcgatcaggtgcgtcatgaagtgcctatgttg
tcactggacaacgttttcgacgaagaaagcttcctggcattctacaaacgagtgcaggat
cgcctgaagagcagcgatccgctgaccttctgctgtgagctgaagctggacggtctggcg
gtcagcctgctgtacgaagatggcgaactggttcgcgcggctacccgtggcgacggcacc
accggtgaaaacattacctctaacgtgcgcaccatccgcgccattccactgcgattgaca
ggtgacaatatcccgcgccggctggaagtgcgtggcgaagtgtttatgccgcaggccggt
ttcgagcagatgaacgaagaggcgcgtcgcaaggacggcaagatcttcgccaatccgcgt
aacgctgccgccggttcgattcgtcagctcgacccgcgtattaccgccaaacgcccactg
acctttttctgttatggcgttggcctgctggaaggcggcgaattgcctcgcagccactgg
cagcgcctgatgcagttcaaagactgggggttaccggtcagcgatcgcgccaaacgttgt
accggcagcgacgaagtgctggcgttctaccgccaggtggagcaggaccgcacgcaactt
gggtttgatatcgacggcgtggtagtgaaaatcgacgatattgacctgcaggaaacgctg
ggctttgtggcgcgtgcgccgcgctgggcgacggcattcaaattcccggcgcaggagcag
attacccaggtgcgcgaggtggaattccaggttggccgtaccggtgcgatcacgccggtg
gcaagactggagcccgtgctggttgccggggtgatcgtcagcaacgccacgctgcataac
gccgatgaaattgaacgtttgggcctgcgcatcggcgatacggtgattgtgcgccgtgcc
ggcgacgtgatcccgcaggtggtgggagtgatagccgaacgtcgtccagcggacgcgcgt
gaaattttgttcccgcagcattgtccggtatgcggttccgacgttgagagagtggaaggc
gaagcggtggcacgttgcaccggcgggctgatctgcgctgcacaacgcaaagaagcgctg
aagcactttgtttcccgtcgggcgttggacgtcgacggcatgggcgacaaaatcatcgag
cagttggtggaaaaagagtatgtgaagaatccggccgatctgttccgtctgtccgccggc
attctgaccgggctggatcgcatggggccgaaatcggcgcagaatctggtcaacgcgctg
gaaaaatccaagcagaccacctttgcccgtttcctgtatgcgcttggcatccgtgaagtc
ggcgaagccacagcggccaatctggctgcacacttcggtacgctggataaactgttagcc
gctgatatcgaggcgttgaaagaagtgcccgaggtcggtgaaatcgtggcgaagcacacg
cgtcatttccttgacgaagagctcaaccaacaggttatccaggaactggttagtgacgaa
atcggcattaactggccggccccggtggtgatagtagcggaagagatcgacagcccgttt
gccggcaaaaccgtggtgctgaccggctcgttgagccagctatcacgtgacgaggccaaa
gatcgtctgacggcgctgggcgccaaggtcagtggcagcgtatcgaagaaaaccgatctg
gtgattgcaggtgaagccgccggttccaaactggtgaaggcgcaggaactgggcattgag
gtcattgacgaagcggaaatgatccgcctgctgggggcctga
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