Streptococcus periodonticum: EHW89_04135
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Entry
EHW89_04135 CDS
T06568
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
spei
Streptococcus periodonticum
Pathway
spei03030
DNA replication
spei03410
Base excision repair
spei03420
Nucleotide excision repair
spei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EHW89_04135 (ligA)
03410 Base excision repair
EHW89_04135 (ligA)
03420 Nucleotide excision repair
EHW89_04135 (ligA)
03430 Mismatch repair
EHW89_04135 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spei03032
]
EHW89_04135 (ligA)
03400 DNA repair and recombination proteins [BR:
spei03400
]
EHW89_04135 (ligA)
Enzymes [BR:
spei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EHW89_04135 (ligA)
DNA replication proteins [BR:
spei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EHW89_04135 (ligA)
DNA repair and recombination proteins [BR:
spei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EHW89_04135 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EHW89_04135 (ligA)
MMR (mismatch excision repair)
DNA ligase
EHW89_04135 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EHW89_04135 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Ribosomal_L33
Motif
Other DBs
NCBI-ProteinID:
AZQ41692
UniProt:
A0A3Q9F385
LinkDB
All DBs
Position
849446..851404
Genome browser
AA seq
652 aa
AA seq
DB search
MKDRMLELVKLLNQYAHEYYTTDNPSVSDSEYDKLYHELLDLEKQYPEFVQPDSPTHRVG
GKVLEGFEKYQHQYPLYSLQDAFSREELDVFDARIRKDFPDVSYLCELKIDGLSVSLMYE
KGILVAGATRGDGSVGENITENLKRVKDIPLKLPSEVDMTVRGECYMPRSSFDAVNQLRQ
ENGEPEFANPRNAAAGTLRQLDTAIVAKRNLATFLYQEASPTSATSQEAVLNQLSKNGFS
VNERHILAHSMDEVWQFIGQIAQERDQLPYDIDGVVIKVNDLAVQEELGFTVKAPKWAIA
YKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRKD
DTVIVYKAGDIIPAVLRVVESKRQSKEKLEIPKNCPSCNSELIHFEDEVALRCINPRCPA
QIKEGLIHFASRDAMNITGLGPAVVEKLFDQQLVNDVAGIYRLTVEDLLQLENFKEKSAN
KLYTAIQASKENSAEKLLFGLGIRHVGSKASQILLEHFHDLEQLAKAEKEEIAALDSLGM
VIAESLSSYFAQEGTHILLSELKEAGLNFTYLGEKVAADAALSGLTVVLTGKLERLNRSE
AKAKLESLGAKVTSSVSKKTSLVVAGADAGSKLTKAQELGITIRDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacagaatgttagaactggtgaagttgctcaatcagtatgctcatgaatattat
acgactgataatccaagcgtatcagatagtgaatatgataagttgtatcatgaattatta
gatttagaaaagcagtatccagagttcgttcagcctgatagcccaactcatcgtgtggga
ggtaaggttttagaaggttttgaaaaataccaacaccagtatccgctctatagtttgcag
gatgctttttcacgtgaagagttagatgtatttgatgcacggattcggaaagattttcca
gatgttagctatctatgtgaactaaaaattgacggcctctctgtttctctcatgtatgaa
aaggggattttagttgcaggagcgactcgcggagacggttctgttggggaaaatatcaca
gaaaatctgaaaagagtgaaagatattcctttaaagttgccaagcgaagttgatatgact
gttcgtggggaatgttacatgccacgcagctcttttgacgcggtgaatcagctacgccag
gaaaacggagaaccagaatttgctaatccgagaaatgcagcggcaggaacattgcgtcag
ttggatacggcgattgttgccaagcgaaatcttgcaacctttctctatcaagaagccagt
ccgacaagtgcgacgagccaagaagctgttttaaatcagttatctaaaaatggattcagt
gtgaatgagcggcatattttggcacattcgatggatgaagtgtggcagtttattggacaa
atcgctcaagaacgcgaccagttaccgtatgatattgacggtgttgtaatcaaggtaaat
gatttggcggtacaagaagagcttggttttaccgtaaaagcacctaaatgggcgattgct
tacaaatttccagccgaggaaaaagaagcgcagcttttatcagttgactggacggttggg
cggactggagttgttacgccgaccgccaacttgacgcctgtgcaattagcagggacaacg
gtcagccgagccactttgcacaatgtagattacattgctgaaaaagatattcgcaaagac
gatacagttatcgtttataaggcgggcgacattattccggctgttttgcgagtggttgaa
agcaagcgccaatcaaaagagaaattggagattccaaagaattgtccaagttgcaacagc
gagttgattcactttgaagatgaggttgctttgcgctgtatcaatccacgttgtcctgca
caaatcaaagaaggcttgattcattttgctagtcgcgatgccatgaatatcacaggtctt
ggtcctgctgttgtagaaaagttatttgatcagcagttggtaaatgatgtggctggcatt
tatcgcttgactgtcgaagatttgctgcaattggaaaattttaaggaaaaatcagctaat
aagttgtatactgctattcaggcttccaaggaaaattctgccgagaaattattatttggt
ttgggcattcgccatgttggaagtaaagccagtcagattttgctagagcattttcatgat
ttggagcaattagcaaaagcagaaaaagaagaaattgctgcgctggatagtctaggaatg
gtgattgctgagagtctttccagctatttcgcacaagaaggaactcatattttattatcg
gaattaaaagaagcggggttaaatttcacttaccttggcgaaaaagtggcagcagatgca
gcgctttctggattgaccgttgttttaacaggaaaattggaacgactgaatcgttcagaa
gcaaaagcgaaattagaaagtttaggtgcaaaggtgacgagctcggtatctaagaaaaca
agtctagtcgttgccggagcagatgcaggaagtaaattaacaaaagctcaagagttgggc
ataaccattcgtgatgaagcttggcttgagagtttatag
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