Solanum pennellii: 107001711
Help
Entry
107001711 CDS
T04130
Name
(RefSeq) DNA repair protein RAD16-like
KO
K15083
DNA repair protein RAD16
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107001711
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
107001711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
zf-RING_5
DEAD
zf-C3HC4_3
zf-RING_2
zf-C3HC4_4
zf-Nse
Prok-RING_4
FAM186A-B_N
Motif
Other DBs
NCBI-GeneID:
107001711
NCBI-ProteinID:
XP_015055166
LinkDB
All DBs
Position
10:complement(57459886..57467783)
Genome browser
AA seq
889 aa
AA seq
DB search
MKLRSRPSSSPAEGKQSRQYQDSSDEDDLLSIPSDSEYNVISDEDVADEVVNLNEEVVCS
NRTKRNGGKKRIETKEDQGEEEEHVDLVLNEVGGGGEVDAGYLQLIGRIEDRKKIREKNQ
KKRPILLWEIWEEENDSWMAENYPNDPDLNIQDELVTETAQPPSDFIMPLLRYQKEWLSW
ALKQEESNARGGILADEMGMGKTAQAIALVLARRELAQAISDSSLLSSAPCSSQELLAVK
GTLVICPVVAVIQWVSEIDRFTAKGSNKVLVYHGANREKNIDKFAEYEFVITTYSTVEAE
YRKNVLPPKEKCQWCGKSFYEQKLPFHQKYYCGPHAVKTDKQSKQQSKPGGKPSKLKKNP
IEGDSEIDTGKGGRGKGIKRKSDTDAGSVDDSACASQDMSPRKSVLHCVKWNRIILDEAH
YVKDRRSNTTKAILALESSYKWALSGTPLQNRVGELYSLVRFLQILPYSYYFCKDCDCRV
LDYSSSDCPHCPHKPVRHFCWWNRYIASPIQSQGNYGTGKDAMVLLKHKILKSILLRRTK
KGRAADLALPPRIVTLRKDSLDVKEEDYYTSLYNESQAQFNTYIQAGTLMNNYAHIFDLL
TRLRQAVDHPYLVVYSSVALARRESTNDAGSVEQPCGLCHDPVEDPVVTSCTHVFCKSCL
IDFSASVGQVSCPSCAKTLTVDFTANDKGDQKSKATIKGFRSSSILNRIHLDNFQTSTKI
EALREEIRFMIERDGSAKAIVFSQFTSFLDLIHYALQKSGVGCVQLDGSMSMTARDSAIT
RFTEDPDCRIFLMSLKAGGVALNLTVASQVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI
VRFVIENTVEERILKLQQKKELVFEGTVGGSSAALGKLTEADLKFLFVT
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgaagctccgttctcgtccttcttcctctcccgccgaaggaaaacaaagccgccaatat
caggacagctctgatgaggatgaccttctttctataccctcggattctgagtacaatgta
atcagtgatgaagatgtagctgatgaagttgttaatttaaatgaggaagtggtatgctct
aatagaacaaaaagaaacgggggcaaaaagaggattgaaacaaaagaagatcagggagaa
gaagaggaacatgtagatttggtattgaatgaagtaggagggggtggtgaagtagatgct
ggctaccttcaattgatagggaggatagaggataggaagaagatccgtgaaaagaatcaa
aagaagagacctattttgctgtgggagatctgggaagaagaaaacgatagttggatggct
gaaaactatccaaatgatcctgacctcaatattcaggatgagttggtgactgaaactgct
cagccaccatctgatttcattatgcccttgctgaggtaccagaaagagtggttgtcttgg
gcgttgaagcaagaagaatctaatgctagaggcggtatacttgctgatgagatggggatg
gggaagactgctcaagccatagctcttgttcttgctagacgtgaactagcgcaagcaatt
tctgattccagtttgctctcatctgccccttgttcttcccaggagctccttgcagtgaaa
ggaacactagttatatgtccggttgttgctgtgattcagtgggtcagtgagattgaccgc
ttcaccgctaaaggaagcaacaaagttctggtataccatggtgccaatagggagaagaac
attgacaaatttgcagaatatgaatttgtcatcactacatactccacggtggaggctgag
taccggaaaaatgtgttgccaccaaaagaaaaatgtcagtggtgtggaaagtctttttat
gaacaaaagctcccttttcaccagaagtactattgtggaccacatgccgttaaaacggac
aaacaatcaaagcagcagagcaagcctggaggaaaaccatcaaagctgaaaaagaatcct
attgaaggtgattcagagattgatacgggtaaaggaggtcgtgggaagggtataaagcgc
aaaagcgatactgatgctggttctgttgatgattcagcctgtgccagtcaagatatgtcc
ccgaggaagtcagttttgcactgtgtgaaatggaatcgtatcattttggatgaggcccat
tatgtaaaagatagacgttccaacactacaaaagctattcttgcgctagaatcttcttat
aagtgggccttaagtggtactcccctccagaaccgtgtaggagagctttactctcttgtc
cgtttcctgcaaattcttccttactcgtactacttctgcaaagattgtgattgcagagtt
ctggactatagctcatccgattgcccacattgcccccacaaacctgttcggcatttttgc
tggtggaatagatatattgcgtcacccatacaatctcaagggaattatgggactggtaaa
gatgcgatggttttgttgaaacacaaaattttgaaaagcatattgctaagacgtactaaa
aagggaagggctgctgatcttgcacttccaccaaggattgttaccttgcggaaagattct
ttggatgttaaagaagaagactactacacatcactgtacaatgaaagccaggcacaattt
aatacatacattcaagctggtactttgatgaataactatgctcacatttttgatctactc
acacgcctgcgacaggcagttgatcatccttaccttgtggtatactcgagtgttgctttg
gctagaagagaaagcacaaatgatgctggctctgttgaacaaccatgtggtttatgtcat
gatccagtagaagatccagttgttacttcttgcacacacgtcttttgcaagtcatgtcta
atagatttttctgcaagtgtgggacaagtttcatgcccttcatgtgctaaaacacttaca
gtggatttcacggcaaatgataagggggatcagaaatctaaagctactatcaaagggttt
aggtcctcaagtatactgaacagaattcatcttgataatttccagacaagcacaaaaata
gaggctttgagagaagaaataaggttcatgattgaaagagatggttctgcgaaagcaata
gtcttcagtcaattcacatcatttttggatctgatacactatgctctacagaagtcgggc
gtcggttgtgttcagttagatggatccatgtctatgactgccagagattctgcaattaca
agattcaccgaggatccagattgcaggatattccttatgagcttgaaagccggaggtgtt
gccctcaatcttacagtggcatcacaagttttcttgatggatccttggtggaatcctgct
gtggagcagcaagcccaagatagaatccatcgaatagggcagtataaaccaatcaggatt
gtgagatttgtgattgagaatacagtcgaggagaggatcttaaagttgcaacagaagaag
gagcttgtttttgaagggacggtcggtggctcttctgcggccttggggaaattaacagag
gcagacttgaagttcttgtttgtaacctaa
DBGET
integrated database retrieval system
