Solanum pennellii: 107013465
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Entry
107013465 CDS
T04130
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
spen03036
]
107013465
03400 DNA repair and recombination proteins [BR:
spen03400
]
107013465
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
107013465
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
107013465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
Motif
Other DBs
NCBI-GeneID:
107013465
NCBI-ProteinID:
XP_027771413
LinkDB
All DBs
Position
3:54389142..54410058
Genome browser
AA seq
1446 aa
AA seq
DB search
MRSSKRHCEDFSTETPRKKPSRVLRIQVDSDEEVGNNEGKVFYFRVLLPNGITLELQVPG
PPSEMPVEDFVILVRREYQNIGRRTDSPKPRRQINWTSKDLHFVDAFDNRITKTMDFRKF
KSNKSHMLRLCDGSVEADKYENMWDLTPDTDLLKELPEEYTFETALADLIDNSLQAVWSK
STDQRRLIRALPVALNTTLKKEGISFPYDPRVIILNTPVKTKQEHIGFYLVAIASPQSLE
LTKSRITIFDTGLGMDGSAENSIVKWGKMGASIHRSARDRGIGGKPPYLTVVASFQYTPY
FGMFGYGGPIASMHLGRRASVSSKTKECKKVYVLHLERDSLLRCSSSQQTWRTDGNVRDP
LEDELRHSVDGSFTKVEIFYPKMRSESVQELQYKLKDIYFPYIQCDEVSKTGKTVMPIEF
QVNGTNLAEIEGGEVATTNLLSCNGPEFVMQLSFQVKDSSGLKVGSGTKSSFEAHARLRC
VYFPVAQGKESIEVILEKLEADGYGITENFETFSHVSVRRLGRLLPDARWSWLPFMEPKL
RKSDRAEVLKRCCFRVKCFIASLSNILLAETDAGFNPTPSKTDLAHHHPFTIALRNFGNK
PSKKENDVLIEIAKDGKKLSLLQLEKLYQEWLFQMHDRYDEEIDCGEDQPTFVVVGPLHK
KELGVSADVMRIHKAFQRKGITWKAGQKVKILKGAYRGFHKNNIFATLEFIILEGWQGDS
GGEARIICRPLNVPAESGCRLTFDKGCACFEIRDSKSLPISVIDTGKCLSVDKTEWENQI
LKHQEKTTPSSIDILDAEQCLELEIEGALPQDVDAGHEPPEEITAVVRPVSFTSATASKN
LDQKYIMKENFVMTLEIKFKADENEKEQHIYSGQLNPSSLKGFHGLYMFPLKKKLPNLFQ
TAGIYLFRFSLIESCTISVKEVRVKALSEPASWELVSDGKSTHSVRQRMSRLIKAKERLT
DRGELPYLNVNTVKDMVGSCFPEVFSVACRDRFCNRIPFKSQTEIEMKLSSGGRAISSEC
SYDQYITHDSYTMKFKNVTIESSELDMIRPSYNATLHINSRENPFVVAIPCAVIPGPLQR
ILLRPVDFGKKLVPGMVLKELALETFDKYGNHMRKDEHIKLTLEGLHLLDKGNSFYKVDD
HGCVNLSGTLKVTAGYGKLVSLSVLSGDEVVFKKEFQTDRRSLRVASKVPKVCAAGSHLE
DVVFEVVNSAGEVDEDIDSEIEDGHSHTLQIRQDSLREEDNVRYSFHRGRCIVRSIPLPN
NEGLFFFVASHSRFHELQTSIEVHVEKAVIQPRSPKKEILLLEESNGKGPETVCHDSYDG
RIMIFNDSCASMVLEDRQQKLGDDICRYGLCIRQCDANVESLSIKQSNIELEMSNLGGIN
SADAWTHAKGSGLHSVNVSERSVPKSRNIDGWDYQFGWFKCSPDISFLFLMSLEFSPTCP
YSVPVL
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgaggtcgagtaaaaggcactgtgaagatttttcgactgaaacgccgagaaagaagcca
tctagggttttaagaatccaagttgattcagatgaagaagttggtaataatgaaggaaaa
gttttttattttcgggttctgttgcctaatggaataactttagagttgcaagtacctgga
ccacctagtgaaatgcctgttgaggattttgttattttagtgaggcgagaataccaaaat
atcgggcgaagaacagattcacctaagcctagaagacagattaattggactagcaaggat
ttgcattttgttgatgcttttgataacaggataacgaagacgatggatttcagaaagttt
aaatccaacaagtctcatatgctaaggctctgtgatggttcagttgaagcagataaatat
gagaatatgtgggaccttacaccagatactgatttattgaaggaactgcctgaagagtat
acatttgaaaccgcactggcagatttgatcgataattcattgcaggcagtatggtctaag
tctacagaccagagaagattaataagggctttgcctgttgccctgaatacaactctgaag
aaagagggaatcagtttcccctatgatcctagggtgatcattttgaatacaccagttaag
accaaacaagaacacattggcttctacctagttgctatcgcctctccccaaagtctagag
ctaactaagagcaggattacaatatttgacacaggccttggaatggatggaagtgctgaa
aactccatagtgaaatggggaaaaatgggagcttccattcatagatcagcgagagacaga
ggcataggaggaaaacctccatacttaacggttgttgcatcattccaatacacaccttac
tttggtatgtttggttatggagggcctattgcatctatgcatttaggcagaagagcctct
gtttcgtcaaagacgaaggagtgtaagaaagtatacgtgttacatcttgagagagattct
ttgctccgctgttcttcgtctcaacaaacttggaggactgatggaaatgttagagacccc
ttggaagatgaactacgtcactcagttgatggtagcttcactaaagttgaaattttttat
ccaaagatgagaagcgaaagcgtacaggaactacaatacaaactgaaagatatatacttc
ccgtatatacagtgtgatgaagtatcaaaaacaggaaaaactgtgatgcctattgagttt
caggtcaatggcactaatttagcggaaatcgaaggtggagaggtggcaaccacaaactta
ctgtcctgcaatggtccagagtttgtaatgcaactaagctttcaagtaaaggatagcagt
ggtttgaaagttggttcaggaacaaaatcctccttcgaagcacatgctcgcctgaggtgt
gtttattttccggtggcgcagggtaaagagagcattgaggtgatattggaaaagctagag
gcagatgggtatggaattaccgagaattttgaaactttcagccatgtttctgtccgtcgg
ttgggtcgtctacttccagatgctcgttggtcttggcttccctttatggaaccaaagcta
agaaaaagtgatagggctgaagtcctgaagagatgttgctttagagtaaaatgcttcata
gcatcactgagcaatattctgcttgcagagaccgatgctggtttcaacccaacaccgtca
aagactgacttagcacatcaccatcctttcaccattgcattaaggaactttggcaacaag
ccttcaaagaaagagaatgatgttctcattgagatagccaaagatggaaagaagttgtct
ctcttgcaattggagaagctatatcaggagtggctgtttcagatgcatgatcgctatgac
gaggagattgactgtggagaggatcaacctacttttgtagttgttggccctttacacaag
aaagagcttggcgtttctgcagatgttatgagaattcataaggctttccagaggaaaggc
ataacttggaaagcagggcagaaggttaaaattttgaagggagcttacaggggtttccat
aagaacaacattttcgccacattggaatttattatccttgaaggatggcagggggactcg
ggcggtgaggctcgaattatctgcaggccattaaatgtcccagctgagagtggttgtcgc
ctcacatttgataaaggatgtgcttgctttgaaattcgtgattcaaaatctttgccgatt
agtgtgattgacactggaaagtgcttgtctgttgataaaacagaatgggagaaccaaatt
ttgaaacaccaagagaaaaccacaccatcatcaatcgatatattagacgctgagcaatgt
ttggaattggaaattgagggggcgctacctcaggatgttgatgctggacatgaacctcca
gaggagattactgcagttgttcgtccagtttcttttacttctgctactgcatccaaaaat
ttggatcagaaatacatcatgaaagaaaattttgtgatgactctagagatcaaatttaaa
gcagatgagaatgagaaagaacaacatatttactctgggcaattgaatccttcatcgctt
aaaggatttcatggtctatatatgttccccctgaagaagaagttaccaaacctttttcag
acagcaggcatttatctatttcgattttctcttatagaaagttgtacaatttctgtaaag
gaagtgcgcgtgaaagcattgtctgagcctgctagttgggaacttgtaagtgatgggaag
agtacacacagtgttagacagagaatgtcaagactgataaaagcaaaagagagattaaca
gatagaggagaactgccttatcttaacgttaacactgttaaagatatggttggttcttgt
tttccagaggttttcagtgttgcatgtcgtgatagattctgcaatcgtataccattcaag
tcacagacagagatagagatgaagttaagctctggcggccgagctatttcatccgaatgc
agttatgaccaatatattacacatgacagctataccatgaaatttaagaatgtaaccatt
gaaagtagtgaattggatatgattcgaccaagttataatgctaccttacatataaattca
agggagaatccatttgttgtagctattccatgtgcagttattccaggaccattgcagcgt
atccttctgcgtcctgtagattttggcaagaaattggttcctgggatggtacttaaggag
cttgcacttgagacatttgacaaatatggtaaccatatgagaaaagatgagcacatcaag
ctgacactggaaggattacatttactagataaaggaaattctttttataaggttgatgat
catgggtgtgtaaacctaagtggaaccttgaaagtaacagcagggtatggtaaacttgtt
tccctttctgttttgtctggcgatgaagtagttttcaagaaagagttccaaactgatagg
agatcgttgcgagttgcatccaaggtacctaaagtttgtgctgctggttctcatttggaa
gatgttgtttttgaggttgtaaattctgctggtgaagtggatgaagatatcgatagtgaa
atagaagatggccactctcatacccttcagataaggcaggactcactgagggaagaagac
aatgtgagatacagcttccatcgtggacgctgcatcgtccgctctattcctcttccaaat
aacgaagggcttttcttctttgtagccagtcactctcgtttccacgagctgcagacaagc
atagaggtgcatgtcgagaaagctgtaatccaacctagaagtcccaagaaagagattctg
cttcttgaggaatcaaatggcaaaggaccagaaacggtgtgtcatgacagctatgatgga
agaataatgatcttcaacgattcatgtgcttccatggttctggaagacagacaacagaaa
cttggggatgatatttgcagatatggcctatgcatcagacaatgtgatgcaaatgtggag
tcacttagtattaagcaatcaaatattgagcttgagatgtccaacttgggaggtattaat
tcagctgatgcttggacgcatgcaaaaggcagtggattgcatagtgtgaatgtgagtgaa
agaagtgtaccaaagagtaggaatattgatgggtgggactaccagtttggatggttcaaa
tgtagtcctgacatttcttttctgttccttatgtctctggagttctccccgacttgtcct
tactctgttccggtgctataa
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