Solanum pennellii: 107017782
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Entry
107017782 CDS
T04130
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
spen
Solanum pennellii
Pathway
spen04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
107017782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107017782
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
107017782
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
107017782
NCBI-ProteinID:
XP_015073528
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All DBs
Position
4:complement(44928339..44965150)
Genome browser
AA seq
978 aa
AA seq
DB search
MGVPAFYRWLADRYPLSIVDMVEEEPKDDVPVDVSKPNPNGIEFDNLYLDMNGIIHPCFH
PEGKPAPATYNDVFNSIFDYIDHLFSLVRPRKLLYMAIDGVAPRAKMNQQRTRRFRAAKD
AAESEAEEKRLREEFEMEAAILVPTEKPETSDSNVITPGTPFMAVLSIALQYYIHSRLNK
NAGWRFTKVILSDANVPGEGEHKIMSYIRLQRNIPGFNPNTRHCLYGLDADLIMLSLATH
EVHFSILREVITPPGQQEKCFACGQVGHLAASCHGTNGNHGKDGKAVNDTPIHKKKYQFL
HIWVLREYLQYDLEIYNPPFQIDFERVVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLM
SIYRRDFTTMGGYLTDAGEVFLDRVEHFIQAAAVYEDQIFQKRARIQQSIENNERVRKEA
NAQPHPPAEDKVKLGEPGYKERYYSEKFGVSTAEDIHEVRQDVVQKYVEGLCWVCRYYYQ
GVCSWQWFYPYHYAPFASDLKGLADLEITFFPGEPFKPFDQLMGVLPAASAKALPEKYRM
LMMDPSSPISDFYPTDFELDMNGKRFAWQAVVKLPFIDEKKLLAETKKLEDTLTDTEQLR
NSVMFDLLYVHHHHTLAPYIISYYHHNVMIPSRAQRPWIIDANLSGGMNGFIWLSERNGL
RDRVPSPLNGLEDILNNKILNITFLNPAPHKHIPQPPEGVFMPKKMLRAVDIKPFPVLWH
EDHGTRRHLGKDRGSVPGAIAGPSLGEAAHRLLKNSLNIKPGGTNFGVLDQSFSRNFPGN
HVLNRPRPAGPSFYEGGFYDQMSRRNSSPNHRPRFPGPSGHASGFFEDPSYFPSNLMPRG
ASGNPIYAPSPYEFQNTRQNFRIQDRHSYQDQYHSMRNEMSVLTIESGARTRPSLNAARM
PNSGQLSNVCPPPPFTQNVGPLPSPPLQWINKPARGATSMHSKYQETSKGPAYDKQVKQV
YQIKSRPTQESPSTETQQ
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcattttataggtggttggctgatcgatacccactctcaattgtggac
atggtagaggaagagcctaaagatgatgttccggtggatgtttcaaagccaaaccctaat
ggcatagaatttgataacttgtacttggacatgaatggcatcattcatccttgttttcat
cctgaaggaaagcctgcaccagcaacctacaatgacgtattcaactcaatttttgactac
attgaccatcttttctcattagtgcgtccaagaaaactcctctatatggctattgatgga
gtggctcctagagctaagatgaatcagcagagaaccaggcgtttcagagctgctaaagat
gctgctgaatctgaagctgaagaaaaaaggttaagagaagagtttgagatggaggctgct
attttagtgcctacagaaaagcctgagacatctgattcaaatgttattactcctggtacc
ccatttatggcagtactatcaatagctcttcaatattatatacactcgaggttgaataaa
aatgctggctggcggtttaccaaggttatcctttctgacgctaatgtgcctggtgagggt
gaacacaaaattatgtcctacattcgcttgcaacgtaacattcctggcttcaacccgaat
acccgccattgtctctatggtctagatgcagatcttattatgttgtctctggctactcat
gaagttcatttttcaatattgagggaggtgattactccaccaggtcagcaggaaaagtgt
tttgcctgtggtcaggttggacatcttgcagctagttgtcatggtacaaatggaaaccat
ggcaaagatgggaaggctgtgaatgacacacctattcacaagaagaaatatcagtttctc
catatctgggtgctgcgagagtatttgcaatatgatttagagatttacaaccctccattt
cagatagactttgaaagggtggtggatgattttgtttttttgtgtttttttgttggaaac
gattttcttccccatatgccaacactggagattcgagagggtgccatcaatctgctgatg
tccatctatagaagggactttacaactatgggtggttatcttacggatgcgggtgaggtt
tttttggatagagtagaacattttattcaggcggcagcagtttatgaagatcaaatcttc
caaaagagagcccggatacaacagtcgatagaaaataatgaaagggtgagaaaagaggct
aatgctcagccacatcctccggcagaggacaaggtgaagctaggagagcctggatacaag
gaaaggtattattctgagaaatttggtgtatcaactgcagaggatatccatgaagttaga
caagatgtagttcagaagtatgtggaaggattatgttgggtttgccggtattactaccaa
ggtgtttgctcgtggcaatggttttacccatatcattatgctccatttgcttctgatctc
aaaggtctagcagatttggaaattacttttttcccaggggaaccatttaagcccttcgat
cagctaatgggtgttctaccagctgcaagtgcaaaagctcttcctgaaaaatacaggatg
ctgatgatggatccttcatcaccaatttctgatttttacccaacagatttcgaacttgac
atgaatgggaagcgttttgcatggcaggctgttgtaaaattgccgttcatcgatgagaaa
aagttacttgctgaaacaaagaagcttgaagacacgttaacggacacggagcaactaagg
aacagtgtaatgttcgatttgctctatgttcatcatcaccatactttggccccatatatc
atttcgtactatcatcacaatgttatgattccctccagggcccaaaggccatggataatt
gatgcaaatttgagcggtggaatgaacggattcatttggttatctgagaggaatggcctg
agagatagggttccttccccacttaatggattggaagacatcttaaataataagattcta
aatattacctttctgaatccagcacctcataagcacattccgcagcctccagaaggagta
tttatgcccaaaaagatgttgagagctgttgatataaaaccttttcctgtattatggcat
gaagatcatggaacccggcgccatctaggcaaagataggggttctgtacccggggcaata
gcagggccttcactgggagaagcagcacatcggttgcttaagaactcattgaatatcaaa
cctggtggaacaaattttggagtgttggatcaatcattttcccgaaattttccgggcaac
catgttttgaataggccaaggccagctggaccatctttctatgaaggtggattctatgat
caaatgagtcgtaggaattcgtctccgaatcacaggccacggtttcctggaccctctgga
catgcaagtggcttctttgaagacccttcttatttccctagcaaccttatgcctcgtggt
gcatctgggaaccccatatatgctccatccccttatgagttccaaaacactaggcaaaat
ttcaggattcaagatagacattcatatcaagatcagtatcatagcatgagaaatgaaatg
tcagtgttgacaatcgaaagtggtgcaagaacgagaccttctttgaatgcagcaagaatg
ccaaattctggacaactatctaacgtctgcccaccacctccatttacacaaaatgtgggt
cctcttccttcacctcctctgcagtggattaacaaacctgcaagaggagctacatcaatg
cactcaaagtatcaagaaacttcaaaagggcccgcgtacgacaagcaagtcaagcaggtt
taccaaatcaaaagccggccaactcaagagtccccaagtaccgaaacacaacagtaa
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