Solanum pennellii: 107018510
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Entry
107018510 CDS
T04130
Name
(RefSeq) ATP-dependent helicase rhp16-like
KO
K15083
DNA repair protein RAD16
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107018510
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
107018510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
DEAD
ResIII
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4
zf-RING_2
FAD_binding_2
Motif
Other DBs
NCBI-GeneID:
107018510
NCBI-ProteinID:
XP_015074495
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Position
5:complement(68903938..68943165)
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AA seq
713 aa
AA seq
DB search
MNEAQVGGFVDTDLTAEAVCPNITKGECSIKIKEEQVEQDGVINDVGNGGDLLLIWQKWE
EENDRWMEENHTLYLDFNSQNEFMTETAEQPSDLIIPLLRYQKEWLAWALKQEESIVRGG
ILADDMGMGKTVQAIALVLAKRGIGQAISDSGLLSPAPCILPAVKGTLVICPVVAVIQWV
NEIERFTTKGSNTIFVYHGANREKNIGRFAEYDFVITTYSTVETEYRKNIMILRSMNWNR
IILDEAHCVKNIRSNTTRAILSLESSYKWALSGTPLQNRVGELYSLVCFLQITPYSYYFC
EDCDCRALDNSSFECPHCHHQSFRHFCWWNRYIASPIQSQGNHGFGRDAMILLKHKILKT
IMLRRTKKGRAADLGLPLKIVTLRKDCFDVKEEDYYRSLWDESRAQFNIYIQAGTLMNNY
VNIFNLLTRMRQAVDHPYLVECSSSALARSGRTTNVGYAEQTCGLCHYPVEDPIVNSCTH
VFCKSCLINFSAIVEQLSCPSCFKSITVDFTANDQKTKATIKGFRSSSILTRICLDNFQT
STKIEALREEIRFMIEREGSAKAIVFSQFTSFLDLIHYSLQKSGINCVQLDGSMTITARD
SAITRFTNDPDCIIFLMSLKAGGLSLNLTVASHVFLMDPWWNAAVERQAEDRIHRIGQFK
PTRIVRFVIENTIEERILELQEKKKLLFEGTVGGASEALEKLTEADLKFLFVT
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagcccaagtaggtggatttgttgacactgatttaactgcggaagcagtttgt
cccaatataacaaagggtgaatgcagtattaaaataaaagaagagcaggtagaacaagat
ggtgtaataaatgatgtaggaaatggtggtgaccttttattgatatggcaaaaatgggaa
gaagagaacgataggtggatggaagaaaaccatacactttatctagacttcaatagtcag
aatgagtttatgactgaaactgctgagcagccgtctgatttgatcatacccttgctaagg
tatcagaaagaatggttggcttgggctttgaagcaagaagaatctatagttagaggcggt
attcttgcagatgatatggggatggggaagactgttcaagccatagctcttgtgctagct
aaacgtggaatagggcaagcaatttcagattccggtttgctctcacctgccccctgtatt
cttccagcagtgaaaggaacccttgttatatgtccagttgttgctgtaattcagtgggtc
aacgagattgaacgcttcactacaaaaggaagcaacacaatttttgtatatcatggtgcc
aacagggagaaaaatattggcagattcgcggaatatgattttgttatcactacctactca
acagtggagactgagtacaggaaaaatatcatgattttgcgctctatgaattggaatcgt
attattttggatgaggcccattgtgtgaaaaatatacgcagcaacactacaagagctatt
ctttcgctagaatcttcttataagtgggccttaagtggtactcccctacagaaccgtgta
ggagagttgtactcacttgtctgtttcttacaaattactccttactcctactacttctgc
gaagattgtgattgcagagctctcgacaatagctcattcgagtgtccacattgccaccac
caatcttttcgacacttttgctggtggaatagatatattgcctcacccatacaatctcaa
gggaatcatgggtttggtagagatgcgatgattctgttgaaacacaaaattttaaaaacc
ataatgctaagacgtactaaaaagggaagggctgctgatcttggacttcctctaaagatc
gttaccttgcgcaaagattgtttcgatgttaaggaagaagactattacagatcactgtgg
gatgaaagtcgggcacaattcaatatatacattcaagctggtacgttgatgaacaactat
gttaacatttttaatctactcacacgcatgcggcaggccgtcgatcatccttaccttgtg
gaatgctcaagttctgctttggctagaagtggaagaacaactaatgttggctatgctgaa
caaacatgtggtttatgtcattatccagtagaagatccaatcgttaattcttgcacacat
gtcttttgcaagtcatgtctaataaacttttctgcaattgtggaacaactttcatgccct
tcatgttttaaatcaattacagtggatttcacagcaaatgatcagaaaactaaagcaaca
atcaaaggatttaggtcctcgagtatattgaccagaatttgccttgataattttcagaca
agcacaaaaatagaagcgttgagagaagaaataaggttcatgattgaaagagaaggttcc
gcaaaggcaatagtcttcagccaattcacatcatttttggatctgatacactattctcta
cagaagtcggggattaattgtgttcaattagatggatccatgactatcactgcaagagat
tctgcaattacaagatttaccaatgatccagattgcattatatttcttatgagcttgaaa
gccggaggtctttccctgaatcttacagtggcatcacacgtttttttgatggatccttgg
tggaatgctgctgtggagaggcaagctgaagatagaatccatcgaatagggcagtttaaa
ccaacaaggattgtgagatttgtgattgagaatacaatcgaggagaggatcttagagttg
caagagaagaaaaaactactttttgaagggacggtcggtggtgcttcagaggcattggag
aaattaacagaggcagacttgaagttcttgtttgtaacctaa
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