Solanum pennellii: 107022294
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Entry
107022294 CDS
T04130
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107022294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107022294
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107022294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_23
AAA_29
AAA_15
Arf
Zeta_toxin
AAA
ORC-CDC6-like
AAA_30
AAA_28
Motif
Other DBs
NCBI-GeneID:
107022294
NCBI-ProteinID:
XP_015078448
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All DBs
Position
1:101240521..101243968
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AA seq
328 aa
AA seq
DB search
MAVKDKKPSVEINNLKFTYPGIDGHPPPGSTPLIDDFNLTLYPGDRCLLVGSNGAGKTTI
LKILGGKHMVEPDMVRVLGRSAFHDTALTASGDLSYLGGEWRREVAFAGFEVPIQMDVSA
EKMIFGVPGTDPQRRDELIKVLGIDLSWRMHRSSDGQRRRVQICMGLLKPFKVLLLDEIT
VDLDVLARADLLKFLIKECEERGATIIYATHIFDGLENWPSHLIYVAHGKLQLAMPMDRV
KQISNLSLMRTVERWLRKERDEERQRRKERKAKGLPEYEKQVEGTRVVGGDPGRAAGRPL
NNGWAGGTLHSTIAGEENFFLSSNRVLR
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgaaggacaaaaagccatcagtagagatcaacaatctcaagttcacctatcct
ggtatagatggacatccgcctcccggatctacccctttgatagatgatttcaaccttacc
ctttatcctggtgatcgatgccttcttgtcggatctaatggcgcagggaagactacaatc
ctgaagatattgggaggaaagcatatggtagaaccagacatggtcagagtgcttggaaga
tctgcatttcatgacactgctttgacggcttctggagacctcagttatcttggtggagag
tggaggagggaagttgcgtttgctggatttgaggtgcctatccaaatggatgtttctgct
gagaaaatgatttttggggttccaggaactgatccacaaagacgagacgaactaattaag
gttcttggtatcgatctgtcctggagaatgcacagatcatccgatgggcaaagaagaaga
gtgcagatatgtatgggtcttctgaaaccattcaaggtactacttctcgatgagataaca
gttgatctagatgttcttgcaagggctgatcttttgaaatttctgatcaaagaatgtgaa
gagcgaggcgctacaataatttatgcaacacacatttttgatggtcttgagaattggcct
tctcatttaatttatgtggctcatgggaagctgcaattagcaatgccaatggatagggtg
aagcagatcagcaatttatcactaatgaggacagtagagagatggctgaggaaagaaaga
gacgaggagaggcaacgaaggaaagagaggaaggcaaagggccttcctgaatatgaaaaa
caagttgagggcactcgagtggtagggggagatccaggtcgtgctgctggtcgtccatta
aacaatggttgggctggtggaacactacattctactattgcgggcgaagaaaattttttc
ttaagctcaaaccgtgttctaagataa
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