Solanum pennellii: 107025229
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Entry
107025229 CDS
T04130
Name
(RefSeq) ATP-dependent helicase rhp16-like
KO
K15083
DNA repair protein RAD16
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107025229
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
107025229
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_UBOX
DEAD
zf-RING_5
zf-P11
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
107025229
NCBI-ProteinID:
XP_027774337
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Position
7:71372413..71377781
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AA seq
734 aa
AA seq
DB search
MDLRIPDERGEGTDADQRRRVKFWKDNREKVQKQRGSVLKWETVEEEMDEVILKNYSDNS
DNISLAETAEPPSDLILPLLRYQKEWLAWSIKQEESTFKGGILADEMGMGKTVQAIALVL
AQRELKKAASASSTLSSSPSTSQELPTVKGTLVVCPAIGALQWFREIENCTTKDSNKILL
YHGTNRGKFTSNLEEYDFVITTYSTIQADYRPKKSKQKSKNSKLCDDGSSDNSVSVAEDM
SRRKSVLHSVKWDRIILDEAHQIKSVSNATTKAVLALESSYKWALTGTPLQNCIGELYSL
VRFLQVTPYAYYFCENCNCSGLDLSFSDKCPQCRPWPCRRGCHFLWWKKYIEKPSANKRY
MSERMHGDAMILLKHKILKSIMLRRTKKERVVDLSLPMKNVFMRKNSLDVDEFNYYKSLH
NRSREQLDRYVEDGILMNNYAHVFAMITRLRQAADHRYLVMYSRKELASGNKKAGDVEQS
CHLCHDAVEDPVVTCCRHVFCRACMIDLDEGVMEATCPSCTKPLAFDFTGNKDKGDSSSK
PAVKGFRSSSILNKIQLDKFKTSTKIEALKEEISDMFQRDCSAKGIVFSQFTAFLDLIQY
SLELCGINCIQLVGSMSIAARDAVLKRFTEDANCKILLMSLKTGGVALNLTVASHVFIMD
PWWNPAVEQQAQDRVHRIGQYKPVMIVRFVIENTTEERILELQEKKKLLFEGTIGGSSEA
SGKLTNEDLMSLLY
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggatcttcgaattccagacgaaaggggtgaaggtacggatgcggatcaaagacgccgt
gtcaaattctggaaagacaatcgtgagaaagtacaaaagcaaaggggatcagttttgaaa
tgggagacagtggaagaagaaatggatgaagtcattcttaagaattattcagataattct
gataacatctcgcttgctgaaactgctgagccaccatcagatttgatcttgccgcttttg
aggtaccaaaaggagtggttggcttggtcaataaagcaagaagaatctacattcaagggg
ggtattcttgctgatgaaatgggaatggggaagacggttcaagccatagcacttgtgctt
gctcaacgtgaattaaagaaagcagctagtgcttccagtacattgtcgtcttcaccaagt
acttcccaggaactcccaacagtaaaaggaactcttgttgtatgtcctgcgattggagca
ttgcaatggttccgagagattgaaaattgcaccactaaagacagcaacaaaattcttctt
tatcatggcaccaacagggggaaatttacgtccaacctggaggaatatgattttgtcatt
acgacatactccactatccaggctgactataggccaaaaaagtcaaagcagaagagcaag
aactcaaaattgtgtgacgatggttctagtgataattcagtcagtgttgctgaagatatg
tccagaaggaagtcagttctgcattcagtgaagtgggatcgtatcattttggacgaggct
catcaaatcaaatctgtaagcaatgccaccacaaaagcggttcttgctttagaatcttct
tataagtgggccttaactggtacacccctgcaaaactgcattggagaattgtactcactt
gtccgttttttacaagttactccttatgcttattacttttgcgaaaattgtaattgcagc
ggacttgatttaagcttctctgataaatgcccacagtgccgtccctggccttgccgacgt
ggatgccacttcctatggtggaagaaatatattgaaaaaccttcagcgaataagcggtac
atgtccgagaggatgcatggagatgctatgattttgttgaagcacaaaattctgaaaagc
ataatgctaagacgtaccaaaaaggaaagagttgttgatctttcacttcccatgaagaat
gtttttatgagaaaaaactctttggacgtggatgaatttaactactacaagtcattgcac
aatagaagtcgagaacagctcgatagatatgtcgaggatggaattctgatgaataactat
gctcacgtttttgctatgatcacacgcctacggcaggcagctgatcatcgctaccttgtg
atgtactctagaaaagaattggctagtggaaataaaaaggctggagatgttgaacaatca
tgtcacttatgtcatgatgcagtggaagatccagtagttacttgttgtaggcacgtgttt
tgcagggcgtgtatgatagatttagatgaaggagtaatggaagcgacatgcccttcatgt
accaaacccctcgcatttgacttcactggaaataaagataagggagattctagttctaaa
cctgctgtcaaagggtttaggtcttcaagtatattgaataaaattcagcttgataaattc
aagacaagcactaaaatagaagctttgaaggaagaaattagcgacatgtttcaaagagac
tgttctgcaaaaggaatagtttttagccagttcacagcgtttttggatctgatacagtat
tctcttgagttgtgtggcatcaattgtattcaattagttggatccatgtctattgccgca
agagatgctgtacttaaaagattcactgaggatgcaaattgcaagatattgcttatgagc
ttaaagactggaggtgttgccctcaatcttacagttgcatcacatgttttcataatggat
ccttggtggaatcctgcagtggagcagcaagcccaggatagagtccatcgaatagggcaa
tataaaccagtcatgattgtgagatttgtgattgagaatacaactgaagagagaatctta
gagttacaagagaagaagaaattactttttgaagggacaattggtggttcttcagaggcc
tcaggaaagctaacaaacgaggacttgatgtccctgttgtattag
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