Solanum pennellii: 107031770
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Entry
107031770 CDS
T04130
Name
(RefSeq) ABC transporter I family member 21-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107031770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107031770
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107031770
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
nSTAND3
AAA_29
ORC-CDC6-like
AAA_28
NACHT
AAA
AAA_23
Arf
AAA_18
PduV-EutP
G-alpha
AAA_30
SRP54
FtsK_SpoIIIE
AAA_14
AAA_15
AAA_24
AAA_22
AAA_5
Zeta_toxin
AAA_13
Motif
Other DBs
NCBI-GeneID:
107031770
NCBI-ProteinID:
XP_015088729
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Position
9:complement(76332739..76336802)
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AA seq
286 aa
AA seq
DB search
MAGESSSIQVNGMQFSYDFQSPIYFDFNLSVAPRSRCLLLGANGSGKTTLLKILAGKHMV
GGKDVVRVLNLSAFHDTHLVCSGDLAYLGESWSKNVGAVGDIPLQGDFSAEHMIFGVEGV
DPVRREKLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLMDEVTVDLDVVARMD
LLDFFKEECEQRGATIVYATHIFDGLETWATDLVYIQEGVLKRTEKLPELPELKSSPNLL
SVVENWLRSETPIEKKKPAPAPAKAQKSSPFGSSPFQSSRHMSHYR
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagaatcaagcagtattcaagtcaatggaatgcaattttcatatgattttcaa
agtcccatatatttcgatttcaatctcagtgttgctcccagatctcgatgtcttcttctc
ggtgcaaatggatcagggaaaacgacccttttgaagatattggcgggaaaacatatggtc
ggtggaaaagatgtagtcagggtgctgaatttatcggcttttcatgatactcaccttgtt
tgtagtggtgatctcgcttaccttggagagtcttggagcaaaaatgttggtgctgttgga
gatattccacttcagggagatttttcagctgaacatatgatatttggagttgaaggagtg
gatccagttcggcgagaaaagttgattgagctgctggatattgatctgcagtggcgtatg
cacaaggtatccgatggtcagaggcgtagagtacaaatctgcatgggtctccttcacccc
tacaaggttcttttaatggatgaggtcaccgttgacttagatgttgttgcgaggatggat
ttattggatttctttaaggaagaatgtgaacagagaggagctacaattgtctatgcaaca
catatatttgatggactggagacatgggcgactgatcttgtttacatccaagaaggagtt
ctcaagaggactgagaaattacccgagcttcctgagttgaagtcctcccctaatttgctt
tcagtagttgagaactggttgcgttctgagaccccgattgagaaaaagaaaccggctccc
gctccagcaaaagctcaaaagtcctctccttttggctcttctccatttcagtcatctaga
catatgtcacattatcgctga
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