Sphingobium sp. EP60837: EP837_00603
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Entry
EP837_00603 CDS
T04432
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sphb
Sphingobium sp. EP60837
Pathway
sphb03030
DNA replication
sphb03410
Base excision repair
sphb03420
Nucleotide excision repair
sphb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sphb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EP837_00603 (ligA)
03410 Base excision repair
EP837_00603 (ligA)
03420 Nucleotide excision repair
EP837_00603 (ligA)
03430 Mismatch repair
EP837_00603 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphb03032
]
EP837_00603 (ligA)
03400 DNA repair and recombination proteins [BR:
sphb03400
]
EP837_00603 (ligA)
Enzymes [BR:
sphb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EP837_00603 (ligA)
DNA replication proteins [BR:
sphb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EP837_00603 (ligA)
DNA repair and recombination proteins [BR:
sphb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EP837_00603 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EP837_00603 (ligA)
MMR (mismatch excision repair)
DNA ligase
EP837_00603 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EP837_00603 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
DNA_ligase_ZBD
HHH_2
BRCT
Nlig-Ia
PTCB-BRCT
DUF4796_N
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ANI77043
UniProt:
A0A173KV46
LinkDB
All DBs
Position
1:complement(635285..637429)
Genome browser
AA seq
714 aa
AA seq
DB search
MDDSTNPAQMTEAEAANRLMRLAREIARHNRLYHDQDQPEITDAAYDALIRENSALEAAF
PHLVRADSPNAQVGAVPTSGLKKVQHAVRMMSLDNGFSDDDIAEFVARVRRFLALPDDAP
VALTAEPKIDGLSCSLRYEKGELRLAATRGDGTTGEDVTANVRTIGDIPDRLTGCNIPDL
FEVRGEVYMAKADFVALNARLLAEADDPEKARQFANPRNAAAGSLRQKDPSVTASRPLRF
LAHGWGEVSALPAETQLGVMQAIAAWGLPVSDRLTCVDTLPALIAHYRGIEAARADLPFD
IDGVVYKVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGKLTPVGRL
TPVTVGGVVVSNVTLHNADEIARLGLRPGDRIVVQRAGDVIPQVVDNLTRDEARAAFDFP
HHCPVCGSEAVREEGEVDIRCTGGLICGAQRFERLRHFVSRGALDIEGLGEKTIQEFLDL
GWITEPADIFRLKAHRAALLGREGWKEKSVDNLLAAIEAKRQPDAARLLFGLGIRHIGAV
TARDLLKRYTSLAGVRVLAEEIIVLRDATPRLSGEEEARFRNRLDKAIAEMIGVENVGSA
VGHALADFFHEPHNREAWDDLLSEVSPPDYVVETTVSAVTGKTVVFTGKLETMSRDEAKA
QAERLGAKAAGSVSAKTDLVVAGPGAGSKLKQAAALGIEVIDEAAWAEIVKAAG
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggatgattcgaccaaccccgcccaaatgaccgaagccgaagcagctaaccgcttgatg
cgcctcgccagggagatcgcccggcacaaccggctttatcatgaccaggatcagccggaa
atcacggacgcggcctatgacgcgctgatccgcgagaatagcgcgctggaggccgctttc
ccgcatctggtgcgagcggattcgcccaacgcccaggtcggcgcagtccccacgtcgggg
ctgaagaaggtccagcatgccgtgcgcatgatgagcctagataatggcttttcggacgac
gacatcgccgaattcgtcgcccgcgttcgacgtttcctcgcgctgccggacgatgcgccg
gtcgcactcaccgcagagccgaagatcgacggcctctcctgctcgctccgttacgaaaag
ggcgagctgcgactggccgcgacgcgcggggatgggaccactggcgaggatgtgaccgcc
aatgtccgcacgatcggcgacattcccgatcgtctcaccggctgcaatatccccgacctg
ttcgaggtgcggggcgaagtctatatggcgaaggccgacttcgtggcgctgaacgcgcgg
cttctcgccgaagctgatgacccggaaaaggcgcgccagttcgccaatccccgcaatgcg
gcggcgggatcgctgcggcagaaggacccgtccgtaaccgccagtcggccgctgcgcttt
ctggcccatggctggggcgaggtcagcgcgctgcctgcggaaacgcagcttggcgtcatg
caggcgatcgccgcatggggtttgcccgtgtcggaccggctgacctgcgtcgatacgctg
cccgccctgatcgcccattatcgcggcatagaggcggcgcgcgccgacctgcccttcgac
attgacggcgtcgtctataaggtcgaccggctcgattggcagcagcggctgggctttgtc
gccaaagcgccccgctgggcgatcgcgcataaatttccggcagaacgggcgcagacgacg
ctggaagcgatcgatatccaggtcgggcgcacgggcaagctgaccccggtcggccgcctg
acccccgtcaccgttgggggcgtggtcgtatccaacgtcacgctccataatgccgacgag
atagcgcggctcggcctgcggcctggcgaccgcattgtggtgcagcgcgccggagacgtc
atcccgcaagtggtggacaatctgacgcgggatgaggcgcgggccgccttcgactttccc
catcactgcccggtctgcggatcggaggccgtgcgtgaagagggggaagtcgatatccgc
tgcaccggcggcctcatctgcggcgcgcaacggttcgaacggctgcgtcacttcgtcagc
cgtggtgcgctggatattgaagggctgggcgagaagacgattcaggaatttctcgacctt
ggctggatcaccgagcctgccgacattttccggctgaaggcccatcgcgctgcgctgctg
gggcgcgaggggtggaaggaaaagtcggtcgataatctgctcgccgcgatcgaagcaaag
cggcagcctgacgccgcgcggctgctgttcggtctcggcatccgccatatcggcgcggtg
accgcgcgggacttgttgaagcgctacaccagcctcgcgggcgtccgcgtcctggcggag
gagatcatcgtcctgcgtgacgcgacgccccgtctctccggtgaagaagaggcgcgcttt
cgcaatcggctcgacaaggcgattgccgagatgatcggcgttgaaaatgtggggtctgcg
gtaggccatgccttggccgacttcttccatgaaccgcataaccgggaagcatgggacgac
ctgctgtccgaagtgtcgccgcccgattatgtggtcgaaactaccgtgagcgcggtcacc
ggcaagaccgtggtgttcaccggcaagctggaaaccatgagccgcgacgaggccaaggcg
caggcggaacggctgggagcgaaagcggctggatcggtcagcgccaagaccgacctggtg
gtggccggtccgggcgcgggatcgaagctgaagcaggctgcggctttggggatcgaggtg
atcgacgaagcggcttgggcggagattgtgaaagcagcggggtag
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