Sphingomonas sp. FARSPH: DM480_02825 Help Entry DM480_02825       CDS       T05685                                  Name (GenBank) DNA ligase (NAD(+)) LigA   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism sphf  Sphingomonas sp. FARSPH Pathway sphf03030   DNA replication sphf03410   Base excision repair sphf03420   Nucleotide excision repair sphf03430   Mismatch repair Brite KEGG Orthology (KO) [BR:sphf00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     DM480_02825    03410 Base excision repair     DM480_02825    03420 Nucleotide excision repair     DM480_02825    03430 Mismatch repair     DM480_02825  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:sphf03032]     DM480_02825    03400 DNA repair and recombination proteins [BR:sphf03400]     DM480_02825 Enzymes [BR:sphf01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      DM480_02825 DNA replication proteins [BR:sphf03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      DM480_02825 DNA repair and recombination proteins [BR:sphf03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      DM480_02825    NER (nucleotide excision repair)     GGR (global genome repair) factors      DM480_02825    MMR (mismatch excision repair)     DNA ligase      DM480_02825   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       DM480_02825 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT Nlig-Ia Motif Other DBs NCBI-ProteinID:  AXJ94581 UniProt:  A0A345WLM9 LinkDB All DBs Position 560034..562181 Genome browser AA seq 715 aa AA seqDB search MTDAKSADLPATDQEAAAQLESLAAEIAHHNRRYHAEDAPEISDAAYDALVRRNAAIEAA FPHLIRADSPGRLVGAAPSGHLAKVAHARPMMSLDNAFSDEEVAEFVARVRRFLRLADDE AVALTAETKIDGLSCSLRYEGRRLVQALTRGDGAVGEDVTENVRTIADIPATLPADAPDV FEIRGEVYMAKADFAALNRRLSEEAAATGREARQFANPRNAAAGSLRQKDAAVTASRPLK FFAHGWGEVSALPADTQSSVVAAIRRWGLPIADGFTCAVTVEDALAAYRAIEAQRADLPF DIDGVVYKVDRLDWQQRLGQVARAPRWAIAHKFPAERAQTTLNAIDIQVGRTGKLTPVAR LEPVTVGGVVVTNATLHNADEIGRLGVHPGDRVVLQRAGDVIPQIVDNLSRDDTRQPWPF PTHCPECGSAAERAPGEVDFRCSGGLICPAQRVERLRHFVSRHALDIEGLGITNIESFFR DSLIQTPADIFRLTEETLLARERWAAVSARNLIAAIDAKRAPPLDRFLFALGIRHVGEVT ARDLARRWTSWAALMEMIDRAIALRDATPPAIGEGEDKHLARVAKALAGVVDTKQVGPEV ALALVDFFAEPHNRDAVGDLLREVTPADVVWQTRESPVSGKTIVFTGKLETLSRDEAKAQ AEALGARVAGSVSAKTDLVVAGADAGSKLKKAADLGVTVMSEAEWNAMVLESDGS NT seq 2148 nt NT seq  +upstreamnt  +downstreamnt atgaccgacgcgaaatccgccgacctgcccgccaccgaccaggaagccgccgcccagctg gagtcgctcgccgccgagatcgcgcaccacaatcgccgctatcacgcggaggatgcgccc gagatcagcgacgcggcctatgacgcgctcgtccgtcgcaatgccgcgatcgaggccgcc ttcccgcacctgatccgtgccgattcgcccggccggctcgtcggcgccgcgccatcggga cacctcgccaaggtcgcgcacgcgcggccgatgatgagcctcgacaacgccttctccgat gaggaggtcgccgaattcgtcgcccgcgtgcgccgcttcctgcgcctcgccgacgacgag gccgtcgcgctgaccgcggagacgaagatcgacggcctgtcctgctcgctgcgctacgag gggcggcggctggtgcaggcgctgacccgcggcgacggcgcggtcggcgaggacgtgacg gagaatgtccgcacgattgccgacatccccgcaacgcttcccgccgacgcccccgacgtg ttcgagatccgcggcgaggtctatatggccaaggccgacttcgccgcgctcaaccgccgc ctttcggaagaagccgcagcgacgggcagggaggcgcgccagttcgccaacccgcgcaac gccgccgccggctcgctgcgccagaaggacgccgccgtcaccgccagccggccgctcaag ttcttcgcgcacggctggggcgaggtatccgcgctccccgccgacacgcagagcagcgtc gtcgccgcgatccgccgctggggcctgccgatcgccgacggcttcacctgcgctgtgacg gtcgaggacgcgctcgccgcctatcgcgcgatcgaggcgcagcgcgccgacctgcccttc gacatcgacggcgtcgtctataaggtcgaccggctcgactggcagcagcgcctcggccag gtcgcgcgcgcgccgcgctgggcgatcgcgcacaaattccctgccgaacgcgcgcagacg acgcttaatgcgatcgacatccaggtcggccgcaccggcaagctcacccccgtcgcacgg ctggagcccgtcaccgtcggcggcgtcgtcgtcaccaacgcgacgctgcacaatgccgac gagatcggccggctgggcgtccaccccggcgaccgcgtcgtgttgcagcgtgcgggcgac gtcatcccgcagatcgtcgacaatctgtcgcgcgacgacacgcgccaaccctggcccttc cccacccattgccccgaatgcggatcggcggcggaacgcgcacccggcgaggtcgacttc cgctgttcgggcggcctcatctgtcccgcgcaacgcgtcgagcggctgcgccatttcgtc tcgcgccacgcgctcgatatcgaggggctgggcatcaccaatatcgaaagcttcttccgc gattcgctgatccagacgcccgccgacatcttccgcctgaccgaggagacattgctcgcg cgcgagcgctgggcggcggtgtcggcgcgcaacctgatcgccgcgatcgacgcgaagcgc gcgccgccgctcgaccgtttcctgttcgcgctcggcatccgccacgtcggcgaggtgacg gcgcgcgaccttgcccgccgctggacgagctgggcggcgctcatggagatgatcgaccgc gcgatcgcgctgcgcgacgcgacgccgcccgcgatcggcgagggcgaggacaagcatctc gcgcgcgtcgcgaaagcgctggccggcgtcgtcgacacgaagcaggtcgggccggaggtc gcgctcgcgctcgtcgacttcttcgccgaaccgcacaatcgcgacgcggtcggcgatctg ctgcgcgaggtcacgcccgccgatgtcgtctggcagacgcgcgaatcgccggtcagcggc aagacgatcgtgttcaccggcaagctcgaaacgctcagccgcgacgaggcgaaggcacag gccgaggcgctcggcgcgcgcgtcgcgggctcggtgtcggcgaagaccgacctcgtcgtc gcgggcgcggatgcgggctcgaagctgaagaaggcggccgacctgggcgtgacggtgatg agtgaggcggagtggaacgcaatggtgctggagagcgacggctcctaa

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