KEGG   Spiroplasma phoeniceum: SDAV_002036
Entry
SDAV_002036       CDS       T06376                                 
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
sphh  Spiroplasma phoeniceum
Pathway
sphh03030  DNA replication
sphh03410  Base excision repair
sphh03420  Nucleotide excision repair
sphh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sphh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SDAV_002036
   03410 Base excision repair
    SDAV_002036
   03420 Nucleotide excision repair
    SDAV_002036
   03430 Mismatch repair
    SDAV_002036
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sphh03032]
    SDAV_002036
   03400 DNA repair and recombination proteins [BR:sphh03400]
    SDAV_002036
Enzymes [BR:sphh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SDAV_002036
DNA replication proteins [BR:sphh03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SDAV_002036
DNA repair and recombination proteins [BR:sphh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SDAV_002036
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SDAV_002036
   MMR (mismatch excision repair)
    DNA ligase
     SDAV_002036
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SDAV_002036
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT BRCT_2 Nlig-Ia
Other DBs
NCBI-ProteinID: AXF96971
UniProt: A0A345DRY0
LinkDB
Position
complement(1618044..1620047)
AA seq 667 aa
MTFEQAKKRSLVLKEQLEQWNYEYYVNDNPSVSDQEYDRAMQELIAIEQRYSELITIDSP
TQRVSGQVSEKFNKYVHTSPMLSLGNAFNYDDLIHFDEQIKELTGLPEVEYTCELKIDGL
SISLVYDNHLLVMGATRGDGLTGEDVTINIKQIKSIPLRIVQPTLTVRGEVYLSVEEFKK
INEERAKNGESEFANPRNAAAGTLRQLDSTIVAKRKLNAFLYYYVNALQHGIQSQYEALQ
RLEQLKFKTNPEYRYCSNIAAVWEYIQEYEQKRHQLGYEIDGIVIKVNNLNLYNRIGYNA
KNPKWAIAYKFQAEVVITKLLNIFPSVGRTGRITYNAVLEPVRIAGTIVRAATLHNADFI
TERDIRIGDNVQVKKAGDIIPELINYVVSCRQKNAQKWHEATHCPECNSLLERVEGEVDQ
YCINSVCPKKITRGLEHYCSRNAMNIEGISEKIIERLFKLGYLKSFSDLYQLEQYRAEII
ELENFGEKSFENMIASINNSKNNSLERLLFALGIRHVGQKTAKLLARQFKTIANLAAMNI
EQLSIINDIGPIVAASVVDYFAIPANQQELALLRQKGVKMEYYATNQHLAQKFENYRFVI
TGVLSKPREYFKELIESYGGQISESVSAKTTYLLAGADAGNKLVKAQKLNVKIINEEEFQ
QLLNKEG
NT seq 2004 nt   +upstreamnt  +downstreamnt
atgacttttgaacaagcaaaaaaacgtagtttagtattaaaagaacagttagaacaatga
aattatgaatattatgtgaatgataaccctagtgtcagtgatcaagaatatgatcgagca
atgcaagaattaattgcaattgaacaacgatatagtgaattaattacaattgattctcca
acgcaacgtgtttctggtcaagttagcgaaaagtttaataaatatgttcatacaagtcca
atgttaagtttgggaaacgcatttaattatgatgatttaattcattttgatgaacaaatt
aaagaattgactggtttgccagaggttgaatatacttgtgaattaaaaattgatggatta
tcaatttcattagtttatgataatcatcttttagtgatgggggcaactcgtggagatggt
cttactggtgaagatgttactattaatattaaacaaattaaatcaattccgcttcgaatt
gtccaaccaactttaactgttcggggtgaagtttatttatcagttgaagaatttaagaag
ataaatgaggaacgtgcaaaaaatggcgaatctgaatttgctaatcctcgaaatgcagca
gcaggaactttacggcaattagattcaacaattgttgcaaaacgaaagttaaatgcattt
ttatattattatgttaatgctttgcagcatggaattcaatcacagtatgaagcgttacaa
agattagaacaattaaaatttaaaacaaatcctgagtatcgttattgttcaaatattgcg
gcagtgtgagaatatattcaagagtatgaacaaaaacgtcatcaattaggttatgaaatt
gatggaattgtgattaaagttaataacttaaatttatataatcgcataggttataatgct
aaaaatccaaaatgagcaatagcttataaatttcaagcagaagttgtgattacaaaattg
cttaatatttttccttctgttggaagaacagggcggattacttataatgctgttcttgaa
ccagttcgtattgcaggaacaattgtacgagcagcaacattacataatgctgattttatt
actgagcgtgatattcggattggtgataatgttcaagttaaaaaagcgggggatattatt
ccggaactgattaattatgttgtatcttgtcgccaaaaaaatgctcaaaaatgacatgag
gcaacgcattgtccagaatgtaattctttattagaacgtgttgaaggtgaggttgaccag
tattgtattaattctgtttgtcctaaaaaaattactcgggggttagaacattattgttca
cgaaatgcgatgaatattgaaggaattagtgaaaaaattattgaacgattatttaaatta
ggatatttaaaaagttttagtgatttatatcaattagagcaataccgagcggaaattatt
gaattagaaaattttggtgaaaaatcatttgaaaatatgattgcttcaattaataattca
aaaaataattccttagagcgattattgtttgcattaggaattcgacatgttggtcaaaaa
acagcaaaattattagcacgacaatttaaaacaattgctaatttagccgccatgaatatt
gaacaattatcaattattaatgatattggtccaattgtagcagctagtgttgttgattat
tttgcaattccagctaatcaacaagaacttgccttactacgccaaaaaggggttaaaatg
gagtattatgctactaatcagcatttagcacagaagtttgaaaattatcggtttgtgatt
accggagttttatcaaaaccacgagaatattttaaagagttaattgaaagttatggtggg
caaatttctgaaagtgttagtgcaaaaaccacctatttactggcaggggctgatgctggt
aataaattagtaaaagcacaaaaattaaatgttaaaattattaatgaagaagaatttcaa
caattattaaataaggagggataa

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