Sphingopyxis fribergensis: SKP52_17490
Help
Entry
SKP52_17490 CDS
T03542
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk03030
DNA replication
sphk03410
Base excision repair
sphk03420
Nucleotide excision repair
sphk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SKP52_17490 (ligA)
03410 Base excision repair
SKP52_17490 (ligA)
03420 Nucleotide excision repair
SKP52_17490 (ligA)
03430 Mismatch repair
SKP52_17490 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphk03032
]
SKP52_17490 (ligA)
03400 DNA repair and recombination proteins [BR:
sphk03400
]
SKP52_17490 (ligA)
Enzymes [BR:
sphk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SKP52_17490 (ligA)
DNA replication proteins [BR:
sphk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SKP52_17490 (ligA)
DNA repair and recombination proteins [BR:
sphk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SKP52_17490 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SKP52_17490 (ligA)
MMR (mismatch excision repair)
DNA ligase
SKP52_17490 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SKP52_17490 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
PTCB-BRCT
Nlig-Ia
RNA_ligase
Phage_portal_3
Motif
Other DBs
NCBI-ProteinID:
AJA10369
UniProt:
A0A0A7PK65
LinkDB
All DBs
Position
complement(3704333..3706507)
Genome browser
AA seq
724 aa
AA seq
DB search
MTEIESLSEADAANELMRLAKQIAYHSKRYHAEDAPEISDADYDALVRRNSELEAAFPTL
VRADSPNKSVGAAVEASPLAKVTHAQRMMSLDNAFAAEDVEEFAARVRRFLNLGADAVVA
MTAEDKIDGLSCSLRYEKGKLVQAATRGDGSVGEDVTSNVATIADIPQELNGAAPDVFEI
RGEVYMAKADFTALNARLMEEGRALAAQREQAFDPATVRQFANPRNAAAGSLRQKDASVT
ASRPLRFLAHGWGEVSALPADTQFDVMKAIERWGAPVSPLLKRYESVADILAHYAEIERR
RADMDYDIDGVVYKVDSLAWQQRLGFVAKAPRWAIAHKFPAERAQTTLEAIDIQVGRTGK
LTPVGRLVPVTVGGVVVSNVTLHNRDEIGRLGVRPGDRVVIQRAGDVIPQVVENLTRDED
RAPYIFPDHCPVCSSEAVAEEGEVDVRCTGGLICNAQKFERLRHFVSRGALDIEGLGEKS
IQEFLDLGWLDKGPADIFRLKSHRADLLGREGWKEKSVDNLFAAIEAKRTPDAARLLFGL
GIRHIGAVTARDLLKGLGDIARLPSKAAEMQAWLDANPQGEGESDGKYMTRKMEAIKAIL
EVRADGIGPAVAEALTDFFHEPHNRALWDDLLSEVSPPLYVVETRASEVSGMTVVFTGKL
ETMSRDEAKAQAEALGAKAAGSVSAKTGLVVAGPGAGSKLKQASSLGIRVIDEAEWAEIV
AAAG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaatcgaatcgctgtccgaggccgacgctgccaatgaactgatgcggctggcg
aagcagatcgcctatcacagcaaacgctatcacgccgaggatgcgcccgagatttcggac
gccgattatgacgcgctcgttcgccgcaacagcgaactcgaagccgccttcccgacgctg
gtccgcgccgacagtccgaacaaatcggtcggcgcggcggtcgaggcgtcgccgctcgcc
aaggtcacccatgcccaacgcatgatgagcctcgacaacgctttcgccgccgaagatgtc
gaggaattcgcggcgcgcgtgcgccgctttctgaacctcggagccgatgccgtggtcgcg
atgactgccgaagacaagatcgacggcctctcctgttcgctgcgctacgaaaagggcaag
ctggtgcaggccgcgacacgcggcgacggcagcgtcggcgaggatgtgacttcgaacgtc
gccaccatcgccgacatcccccaagaactgaacggcgcggcgccggacgtcttcgagatc
cgcggcgaggtctatatggcgaaggccgatttcaccgcgctcaacgcgcgactgatggaa
gagggaagggcgctcgccgcgcagcgcgagcaggcgttcgaccccgctaccgttcgccag
ttcgccaacccgcgcaacgccgccgcgggttcgctgcgccagaaggacgcgagcgtcacc
gcgtcgcgcccgctgcgcttcctcgcgcatggctggggcgaggtcagcgcgcttcccgcc
gacacccaatttgacgtgatgaaggcgatcgaacgctggggcgctccggtatcaccgctg
ctcaaacgctatgaatcggtcgccgatatcctcgcccattatgccgagatcgagcgccgc
cgcgccgatatggattatgacatcgacggcgtcgtctacaaggtcgacagccttgcatgg
caacagcgtctcggcttcgtcgccaaggcgccgcgctgggccatcgcgcataaattcccc
gccgaacgcgcgcagaccaccctcgaagccatcgatatccaggtcggccgcaccggcaag
ctcacccccgtcggccgcctcgtccccgtcaccgtcggcggcgtcgtcgtgtcgaacgtc
acgctccacaaccgcgacgaaatcggccgccttggcgtgcgccccggcgaccgcgtcgtc
attcaacgggccggcgatgtgatcccgcaggtcgtcgagaacctgacccgcgacgaggac
cgcgccccctatatcttccccgaccattgccccgtctgcagcagcgaggcggtggccgag
gagggagaggtcgacgtgcgctgtaccggcggcctcatctgcaacgcgcagaaattcgag
cgcctccgccatttcgtcagccgcggcgcgctcgacattgaggggctgggcgaaaagagc
attcaggaattcctcgacctcggctggctcgacaaggggcctgccgacatcttccggctg
aaaagccaccgcgccgatctgctcggccgcgagggctggaaggaaaagtcggtcgacaat
ctcttcgccgcgatcgaagcgaagcgcacgcccgatgccgcgcgcctgctcttcggactg
ggcatccgccacatcggcgcggtgaccgcgcgcgatttgctcaaggggctgggcgatatc
gcgcggctgcccagcaaggcggccgaaatgcaggcgtggctcgacgccaatccgcaaggc
gaaggcgagtccgacggcaaatatatgacgcgcaagatggaggcgatcaaagcgatcctc
gaagtgcgcgccgacggcatcggcccggcggtcgccgaggcgctcaccgatttcttccac
gaaccgcacaaccgcgcgctgtgggacgatctcctctccgaagtatcgcctccgctttat
gtggttgagacgcgcgccagcgaagtgtcggggatgacggtagtattcaccggcaagctc
gagacgatgagccgcgacgaagccaaggcgcaggccgaagcgctcggtgccaaggccgcg
ggcagcgtcagcgccaagaccggcctcgtggtcgcagggccgggcgcggggtcgaaactc
aaacaggcgagttcgcttggcatcagagtgatcgacgaggccgaatgggcggagattgtc
gccgccgcggggtga
DBGET
integrated database retrieval system
