Sphingorhabdus lutea: LPB140_08975
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Entry
LPB140_08975 CDS
T04602
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sphl
Sphingorhabdus lutea
Pathway
sphl03030
DNA replication
sphl03410
Base excision repair
sphl03420
Nucleotide excision repair
sphl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sphl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPB140_08975
03410 Base excision repair
LPB140_08975
03420 Nucleotide excision repair
LPB140_08975
03430 Mismatch repair
LPB140_08975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphl03032
]
LPB140_08975
03400 DNA repair and recombination proteins [BR:
sphl03400
]
LPB140_08975
Enzymes [BR:
sphl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LPB140_08975
DNA replication proteins [BR:
sphl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LPB140_08975
DNA repair and recombination proteins [BR:
sphl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LPB140_08975
NER (nucleotide excision repair)
GGR (global genome repair) factors
LPB140_08975
MMR (mismatch excision repair)
DNA ligase
LPB140_08975
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LPB140_08975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
APG62898
UniProt:
A0A1L3JCP0
LinkDB
All DBs
Position
complement(1891891..1893942)
Genome browser
AA seq
683 aa
AA seq
DB search
MIDKAEAANKLMRLAREISRHNKLYHGQDNPQISDAEYDALVRENNELEAQFPDLIRDDS
PNKQIGSAVDSSPLSKITHAKRMMSLDNAFDGDDVRDFAARVRRFLNLSDDENIAFTAED
KIDGLSLSIRYEHGKLVQAATRGDGQVGEDVTANVAKISDIAQQLKGDNIPEIFEIRGEI
YMSKADFAALNEQQEANGGKIFANPRNAAAGSLRQKDAEITASRKLKFWAHGWGEASATP
ANTQSEMITAIASWGVPVSPLFTTCQNVEDLLLHYMQIERQRATLPYDIDGVVYKVDRLD
WQERLGFVTKAPRWAIAHKFPAERAETILESIDIQVGRTGKLTPVGRLKPVTVGGVVVSN
VTLHNRDEIARLGVRPGDIVVVQRAGDVIPQVVENLTYNVEKPAYSFPENCPECDSDAVA
EEGEVDVRCTAGLICPAQRFQRLVHFVSRVALDIEGLGERSIAEFIDLGWLKTPADIFRI
HAQRDELLKREGWKEKSVENLLVSIEAKRAPDPARLLFALGVRHIGATTAKDLVKYFGGF
DEVGQAGRRLSQNDEAMLQEITSIDGIGGAVATALGNFFAEEHNVEIWEDLLKELNPKPY
ISTARETEWSGKTIVFTGKLEKLSRDEAKATAESMGAKASGSISSKTDLLVAGPGAGSKL
KKAQDLGVQTIDEAAWLHIIGRD
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgattgataaagccgaagctgccaataaattgatgcgccttgcgcgggaaatatcgcgg
cataataaattatatcatggacaggataatccgcagatttcggatgccgaatatgatgca
ttggtgcgcgaaaataatgagctggaggcgcaattccccgatcttattcgcgatgatagc
cccaataaacaaataggctcggcggtggatagcagcccgctttccaaaataacccatgcc
aagcggatgatgtcgctcgacaatgcatttgatggcgatgatgtgcgcgattttgccgcg
cgggtaaggcggtttttgaatttgtctgatgatgaaaatattgcatttactgctgaggat
aagattgacgggctgtcgctttcaatacgatatgagcatggaaaattggttcaggcggca
acgcgcggcgatggtcaagtgggggaggatgttaccgcgaatgtcgcgaaaatatccgat
attgcgcagcaattaaaaggtgataatatccccgaaatatttgaaattcgtggtgaaatt
tatatgtcaaaggctgattttgcggccttaaatgaacagcaagaggccaatggcgggaaa
atatttgccaatccgcgcaacgccgctgcggggtctttacggcaaaaagatgccgaaatt
accgcgagcagaaaattgaaattttgggcgcatggttggggagaggccagcgcgaccccg
gcaaatacacaaagcgagatgattacagcaatcgcttcttggggcgtgcccgtttcacca
ttatttaccacatgtcaaaatgtggaggatttgctgttacattatatgcagattgaacgg
caacgtgcgacattgccatatgatattgacggggtggtgtataaggttgatcggttggat
tggcaggaaagacttggctttgtgaccaaagcaccgcgatgggcgattgcgcataaattt
cccgccgaacgcgccgaaaccatattggaatcgattgatattcaggtggggcgaacgggt
aaattaacccccgttggccggttaaagcccgtcaccgttggcggcgtggtggtcagcaat
gtgaccctgcataaccgtgatgaaattgcgcgtttgggggtgcggcctggtgatattgtg
gtagtgcaacgggcgggtgatgttatcccgcaagtggtggaaaatttgacatataatgtc
gaaaaaccggcctattcattccccgaaaactgccccgaatgtgacagtgatgccgtggca
gaggagggcgaggttgatgttcgatgcacggcggggttaatttgtccggcgcaaagattt
cagcgattggtccattttgtttcgcgcgtggcattggatattgaggggctgggagagcgc
agcattgccgaatttatcgatcttggctggttgaaaacaccggcggatatttttcggatt
catgcccaaagggatgaattgttaaagcgtgagggatggaaggaaaaatcggtcgaaaat
cttttggtttcgatagaggcaaaacgtgcgcccgatcctgcgcgtttattatttgcattg
ggagttcgccatattggcgcgacaacggccaaggatttggtgaaatattttggtggtttt
gatgaggttggacaagcgggcaggcggctttcccaaaatgatgaggcgatgctgcaggaa
ataacctccatcgacggaattggcggcgcggttgccacggcattgggtaatttttttgca
gaggaacataatgtcgaaatatgggaagatttattaaaagagctaaaccctaagccatat
atttccaccgcacgcgaaaccgaatggagcggaaaaaccattgtttttaccggtaaattg
gaaaaattaagccgtgatgaggcaaaggcaacggcggaaagcatgggggcaaaggcgtct
ggttcaatttcatcaaaaaccgatttattggtagctggcccaggcgcgggttcaaaatta
aaaaaggcgcaggatttaggcgttcaaaccattgatgaggcggcgtggctgcatattatt
ggccgtgattag
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