Sphingosinicella sp. BN140058: ETR14_14810
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Entry
ETR14_14810 CDS
T05826
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sphs
Sphingosinicella sp. BN140058
Pathway
sphs03030
DNA replication
sphs03410
Base excision repair
sphs03420
Nucleotide excision repair
sphs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sphs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ETR14_14810 (ligA)
03410 Base excision repair
ETR14_14810 (ligA)
03420 Nucleotide excision repair
ETR14_14810 (ligA)
03430 Mismatch repair
ETR14_14810 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphs03032
]
ETR14_14810 (ligA)
03400 DNA repair and recombination proteins [BR:
sphs03400
]
ETR14_14810 (ligA)
Enzymes [BR:
sphs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ETR14_14810 (ligA)
DNA replication proteins [BR:
sphs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ETR14_14810 (ligA)
DNA repair and recombination proteins [BR:
sphs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ETR14_14810 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ETR14_14810 (ligA)
MMR (mismatch excision repair)
DNA ligase
ETR14_14810 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ETR14_14810 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QAY77638
LinkDB
All DBs
Position
3297862..3300003
Genome browser
AA seq
713 aa
AA seq
DB search
MTEAEAAAELARLAREIAHHNRLYHGDDAPEISDADYDALVRRNAALETEFPHLVRDDSP
SRQVGAAPSGPLRKVPHALPMLSLDNAFAAEDVEDFLARVRRFLKLPDTAEIALTAEPKI
DGLSCSLRYERGVLKLAATRGDGAQGEDVTQNVRTIGDIPERLRGEIPEVFEVRGEVYMS
KADFAALNARLKAEAEAKAGPDHEGELKYRQFANPRNAAAGSLRQIDATVTASRPLRFLA
HGWGEVSGLPADTQLGVMKAIESWGLPVSEDLKRFTALDGVLAHYRAIETARAELPFDID
GVVYKVDDLELQRRLGQVARAPRWAIAHKFPAERAETTLEAIDIQVGRTGKLTPVARLTP
VTVGGVTVTNATLHNADEIARLGVRVGDRVLIQRAGDVIPQVLGNLTPEAERPAYVFPDH
CPQCQSEAVREEGEVDVRCTGGLVCPAQRVERLRHFASRHALDITGLGITNIEDFFRDGI
VASPADIFRLHEKKDLLLSRDRWAQTKVDNLLAAIDERRQPPLDRFLFALGIRHVGEVTA
RDLARRYGTFDAFREMIDRARTARAEIVQALGESDEKFRQRRDAAAAAVIETPGIGGEVA
GALVDFFDEPHNRAVVDDLLAAGVTPSRLVWETRESPVSGKTLVFTGSLETLSRDEAKAQ
AEKLGAKVSGSVSAKTDLLIAGPGAGSKLKKAQELGVEVIDEARWNEIVAEAG
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaagccgaagccgccgccgagctggcgcgtctcgcccgcgagatcgcccatcac
aaccgcctctaccacggcgacgatgcgccggagatcagcgatgccgactatgacgcgctg
gtccggcgcaatgcggcgctcgagacggaattcccgcatctggtgcgcgacgacagcccg
tcgcggcaagtcggcgcggcgccgtccgggcccttgcgcaaggtgccgcatgcgctgccg
atgctcagcctcgacaatgcgttcgccgccgaggatgtcgaggacttcctcgcgcgcgtc
cgccgctttctgaagctgccggatacggccgagatcgcgctgaccgccgagcccaagatc
gacggcctgtcctgctcactgcgctacgaaagaggcgtcttgaagctcgccgccacccgg
ggcgacggcgcgcagggcgaagacgtcacccagaatgtccgcacgatcggcgacattccc
gagcgcctgcgcggcgaaatccccgaagtgttcgaggtgcgcggcgaagtctacatgtcc
aaggcggacttcgcggcgctgaatgcgcggctcaaggccgaagcggaggcgaaggccggg
cccgatcacgagggcgagctcaaataccgacaattcgccaatccgcgcaatgccgccgcc
ggatcgctgcgccagatcgatgccacggtgacggcgtcgcggccgctgcgcttcctcgcc
catggctggggcgaagtgtcgggccttcccgccgatactcagctcggcgtgatgaaggcg
atcgagagctgggggctgccggtctcggaggatctcaagcggttcacggctctggacggc
gtgctcgcccattatcgtgcgatcgagaccgcgcgggcggagcttccgttcgacatcgac
ggagtcgtctacaaggtcgacgatctcgagctgcagcgccggctcgggcaggtggcgcgg
gcgccgcgctgggcgatcgcacataaattcccggccgagcgcgccgaaacgacgctcgag
gcgatcgacatccaggtcgggcggacgggcaagctgaccccggtcgcacggctgaccccg
gtcaccgtcggcggcgtcaccgtcaccaacgccaccttgcacaatgccgacgagattgcg
cgtctgggcgtgcgggtcggcgaccgggtgctgatccagcgcgccggcgacgtcatcccg
caggtgctggggaatctgacgccggaggccgagcgcccggcctacgtctttcccgatcac
tgcccgcaatgtcagtcggaggcggtgcgcgaggaaggcgaggtcgacgtccgctgcacc
ggcggcctcgtctgcccggcacaaagggtggagcgcctccgtcacttcgcctcgcgccac
gcgctcgacatcaccggcctcggcatcaccaatatcgaggatttcttccgggacggcatc
gtcgcctcgccggccgacatcttccgcctgcacgagaagaaggacctgctgctctcccgc
gaccgctgggcgcagaccaaggtcgacaatctgctggccgcgatcgacgagcgccgccag
ccgccgctcgaccgcttcctgttcgcgctcggcatccgccacgtcggcgaggtgaccgca
cgcgatctcgcccggcgctacggcacgttcgatgcctttcgcgagatgatcgaccgtgca
cggacggcacgggcggagatcgtccaggcgctcggcgagagcgacgagaagttccgccag
cgccgcgacgccgcagcggcggcggtgatcgagaccccgggcatcggcggcgaagtcgcc
ggggcgctggtcgatttcttcgacgagccgcacaatcgcgcagtcgtcgacgatctgctc
gccgccggcgtgactccaagcaggctcgtctgggagacccgggagagcccggtgtcgggc
aagaccctggtgttcaccggctcgctcgaaacgctgtcgcgcgacgaagcgaaagcgcag
gcggaaaagctcggcgccaaggtctccggatcggtctcggccaagaccgacctgctgatc
gccggccccggcgccggctccaagctgaagaaggcgcaggagctgggcgtcgaggtgatc
gacgaggcgcgctggaacgaaatcgtcgccgaggcggggtga
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