Uncultured Sphingopyxis sp. UC10: SPPYR_0255
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Entry
SPPYR_0255 CDS
T05531
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sphu
Uncultured Sphingopyxis sp. UC10
Pathway
sphu03030
DNA replication
sphu03410
Base excision repair
sphu03420
Nucleotide excision repair
sphu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sphu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPPYR_0255 (ligA)
03410 Base excision repair
SPPYR_0255 (ligA)
03420 Nucleotide excision repair
SPPYR_0255 (ligA)
03430 Mismatch repair
SPPYR_0255 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphu03032
]
SPPYR_0255 (ligA)
03400 DNA repair and recombination proteins [BR:
sphu03400
]
SPPYR_0255 (ligA)
Enzymes [BR:
sphu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SPPYR_0255 (ligA)
DNA replication proteins [BR:
sphu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SPPYR_0255 (ligA)
DNA repair and recombination proteins [BR:
sphu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SPPYR_0255 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SPPYR_0255 (ligA)
MMR (mismatch excision repair)
DNA ligase
SPPYR_0255 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SPPYR_0255 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
DNA_ligase_ZBD
BRCT
HHH_2
Nlig-Ia
PTCB-BRCT
DUF4796_N
DZR_2
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
SBV31375
UniProt:
A0A1Y5PRV7
LinkDB
All DBs
Position
SPPYR:268373..270616
Genome browser
AA seq
747 aa
AA seq
DB search
MTEIESLSEAEAANELMRLARKIAHHSKLYHAEDAPEISDADYDALVRRNNEIENAFPQL
IRADSPNNQVGAAVEGSPLAKVTHRQRMMSLDNAFAAEDVEEFVARVRRFLNLGADAAVA
LTAEDKIDGLSCSLRYEKGKLVQAATRGDGSVGEDVTANVRHIADIPDELVAPAKAGAAG
DSVQTPTAPAFAGATDIPDVFEIRGEVYMAKTDFVALNARLMEEGRALAAQREQDFDPAT
VRQFANPRNAAAGSLRQKDASVTASRPLRFLAHGWGEVSALPADTQYGVMKAIEGWGVPV
SPLLKRYESAEAVLAHYAEIERRRAEMDYDIDGVVYKVDRLDWQQRLGFVAKAPRWAIAH
KFPAERAQTTLEAIDIQVGRTGKLTPVGRLTPVTVGGVVVSNVTLHNRDEIGRLGVRPGD
RVVIQRAGDVIPQVVENLTRDEDRAAFAFPDHCPVCGSEAVAEEGEVDVRCTGGLICNAQ
KFERLRHFVSRGALDIEGLGEKSIAEFLELGWLDKGPADIFRLKAHRDELLGREGWKEKS
VDNLFAAIEAKRQPDAARLLFGLGIRHVGAVTARDLLKGLGDIKRLPEKAAEIHAYLEAN
PRGEGESDGKYTARRVEAFKAILEVRADGIGIAVGEALADFFHEPHNRALWDDLLSEVAP
PLYVVETRASEVSGMTVVFTGKLETMSRDEAKAQAEALGAKAAGSVSAKTDLVVAGPGAG
SKLKQASALGIRVIDEGEWAKIVEAAG
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaatcgaatccctgtccgaggccgaggccgccaacgagctgatgcggctggct
aggaagatcgcccatcacagcaagctttatcatgccgaggatgcgcccgagatttcggac
gccgactatgacgcgctcgtccgccgcaacaatgaaatcgagaatgccttcccgcaactg
atccgcgccgacagcccgaacaatcaggtcggcgccgcggtcgagggatcgccgctcgcc
aaggtcacgcaccggcagcggatgatgagtctcgacaatgccttcgctgccgaggatgtc
gaggagttcgtcgcgcgcgtgcgccgctttctcaacctcggtgccgatgccgcggtcgcg
ctgaccgccgaggacaagatcgacggcctgtcctgctcgctgcgctatgaaaagggcaag
ctcgtccaggccgcgacgcgcggcgacggcagcgtcggtgaggatgtcaccgccaacgtc
cgccacatcgccgacattcccgacgaactcgtcgcccccgcgaaggcgggggccgctgga
gatagcgtacaaacgccaacggcccccgccttcgcgggggcgaccgatattcccgatgtc
ttcgagattcgcggcgaggtctatatggcgaaaaccgacttcgtggcgctcaacgcgcga
ttgatggaagagggcagggcgctcgcggcgcagcgcgaacaggatttcgatcccgccacg
gtccgccagttcgccaatccgcgcaacgccgccgcgggttcgctgcgccagaaggatgcg
agcgtcaccgcgtcgcgtccgctgcgcttcctcgcgcacggctggggcgaggtcagcgcg
cttcccgccgatacccaatatggggtgatgaaggcgatcgagggctggggcgtgccggtg
tcgccgctcttgaaacgctatgagagcgccgaggcggtcctcgcccactatgccgaaatc
gagcgtcgccgcgccgagatggactatgacatcgacggcgtcgtctacaaggtcgaccgg
ctcgactggcagcaaaggctgggcttcgtcgccaaggcgccgcgctgggccatcgcgcat
aaattccccgccgaacgcgcgcagacgaccttggaggccatcgacatccaggtcggccgc
accggcaagctcacccccgtcgggcgcctgacccccgtcaccgtcggcggcgtggtggta
tcgaacgtcacgctccacaaccgcgacgaaatcggccggctcggcgtgcgccccggcgac
cgcgtcgtcatccagcgcgcgggcgacgtgatcccgcaagtcgtcgaaaatctcacccgc
gacgaggatcgcgcggccttcgcctttcccgaccattgcccggtgtgcggcagcgaggcg
gtcgccgaggagggcgaggtcgacgtccgctgcaccggcggcctcatctgcaacgcacag
aaattcgagcggctgcgccacttcgtcagccgcggcgcgctcgacatcgaggggctcggc
gaaaagagcatcgccgagtttctggaactcggctggctcgacaaggggccggccgacatc
ttccggctcaaggcgcatcgcgacgaactgctcgggcgcgaggggtggaaggaaaagtcg
gtcgacaatctcttcgccgcgatcgaggcgaagcggcagcccgacgcggcgcggctgctc
ttcggactcggcatccgccatgtcggcgcggtgaccgcgcgcgatctcttgaaggggctg
ggcgacataaagcggctccccgaaaaggcggccgaaatccacgcctatcttgaagccaac
ccgcgcggcgagggcgagtccgacggcaaatatacggcacgccgcgtcgaggcgttcaag
gcgatcctcgaagtgcgcgccgacgggatcggcatcgcggtcggcgaggcgctcgccgat
ttcttccacgaaccgcacaaccgcgcgctgtgggacgatctcctctccgaagtcgcgccg
ccgctttacgttgtcgagacgcgcgcgagcgaggtgtcggggatgacggtggtgttcacc
ggcaagctcgagaccatgagccgcgacgaagccaaggcgcaggccgaggcgctcggcgcc
aaggccgcgggcagcgtcagcgccaagaccgacctcgtcgtcgcgggcccgggcgcgggg
tcgaagctcaagcaggcgagcgcgctggggatcagggtgatcgacgagggtgaatgggcg
aagatcgtcgaggcggcgggatga
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