Streptomyces phaeolivaceus: F9278_03115
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Entry
F9278_03115 CDS
T07107
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sphv
Streptomyces phaeolivaceus
Pathway
sphv03030
DNA replication
sphv03410
Base excision repair
sphv03420
Nucleotide excision repair
sphv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sphv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F9278_03115 (ligA)
03410 Base excision repair
F9278_03115 (ligA)
03420 Nucleotide excision repair
F9278_03115 (ligA)
03430 Mismatch repair
F9278_03115 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphv03032
]
F9278_03115 (ligA)
03400 DNA repair and recombination proteins [BR:
sphv03400
]
F9278_03115 (ligA)
Enzymes [BR:
sphv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F9278_03115 (ligA)
DNA replication proteins [BR:
sphv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F9278_03115 (ligA)
DNA repair and recombination proteins [BR:
sphv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F9278_03115 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F9278_03115 (ligA)
MMR (mismatch excision repair)
DNA ligase
F9278_03115 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F9278_03115 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
HHH_2
BRCT
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QFQ95345
UniProt:
A0A5P8JWF1
LinkDB
All DBs
Position
601759..603960
Genome browser
AA seq
733 aa
AA seq
DB search
MTTSVAVIVDAAAYAQAVEDAVRASAAYYTGGTSVLDDDAYDRLVRGIAAWEADHPEQVL
PESPTGKVAGGAVEGDVPHTVAMLSLDNVFSGEEFTAWTASLTRRIGHEVERFGVEPKLD
GLAVAARYTRGRLTRLITRGDGTAGEDVSHAIGTIEGLPAELAEPVTVEVRGEVLMTNAQ
FEHANEVRTDHGGQPFANPRNAAAGTLRAKERAYTVPMTFFGYGLLALPDTDAGSAARLG
ELAHSELMARAAELGVNTTAGTAVPGVTAATAEEVLDRVKEIAALRAELPFGIDGIVIKA
DLAADQRAAGSGSRAPRWAIAYKLPAVEKITRLLDVQWNVGRTGIIAPRGVLEPVEIDGS
TITYATLHNPADITRRDLRLGDHVMVHRAGDVIPRVEAPVAHLRTGDEQPIVFPEVCPRC
GSAIDTGEQRWRCENGRNCHLVASLSYAVGRDQLDVEGLGHTRVVQLVEAGLVADLADLF
ALTREQLLGLERMGETSTDNLLAALDTARGRPLSRVLCALGVRGTGRSMSRRIARYFATM
DHLRAADAEAIQRVEGIGTEKAPSIVAELAELAPLIDRLTAAGVNMTEPGATPPAPADAE
SADAGTGAGAGTGTGTGTGTGTGTGEGTGEGADGTDSIGGDAPQPSSEPGGPLAGMAVVV
TGAMTGVLEKLSRNQMNELIERAGGRASSSVSKKTSLVVAGENAGSKRAKAETLGIRLAA
PDEFAALVADFLD
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgacgacatcagttgcagtgatcgtggatgccgccgcctacgcgcaggccgtcgaggac
gcggtgcgggcttctgccgcgtactacacgggcgggacgtcggtgctggacgatgacgcg
tacgaccggctcgtgcgggggatcgcggcgtgggaggcggaccatcccgagcaggtgctg
ccggagtcgccgaccgggaaggtggccggcggggcggtcgagggggacgtgccgcacacg
gtggcgatgctcagtctggacaatgtgttctcgggtgaggagttcacggcgtggacggct
tcgctgacccggcggatcgggcatgaggtcgagcggttcggggtggagccgaagctcgac
gggctggcggtcgccgcccgctacacacgggggcggctcacccggctgatcactcggggc
gacgggacggccggggaggacgtctcgcacgccatcggcacgatcgaggggctgcccgcc
gagctggccgagccggtcaccgtggaggtccggggcgaagtcctcatgacgaacgcccag
ttcgagcacgccaacgaggtgcgcaccgaccacggcggacagcccttcgcgaaccctcgg
aacgcggcggcgggcaccctgcgcgccaaggagcgggcctacaccgtgccgatgacgttc
ttcgggtacgggctgctggcgctgccggacacggacgccgggtccgccgcgcggctgggc
gagctggcccacagcgaactgatggcgcgggccgccgaactcggggtgaacaccaccgcc
ggcacggccgtgcccggtgtcaccgcggccacggccgaggaggtcctggaccgggtcaag
gagatcgccgcgctccgggccgagctgccgttcgggatcgacgggatcgtcatcaaggcc
gacctcgccgccgaccagcgggccgccggttcgggctcacgcgccccgcgctgggccatc
gcctacaagctgcccgccgtggagaagatcacccggctcctcgatgtgcagtggaacgtg
ggccgcaccggcatcatcgccccgcgcggggtgctggagccggtcgagatcgacggctcc
accatcacctacgccaccctgcacaacccggccgacatcacccgccgcgatctgcggctg
ggcgaccatgtcatggtgcaccgcgccggtgatgtcatcccccgtgtggaagcgcccgtc
gcccatctgcgcaccggcgacgaacagcccatcgtcttccccgaggtgtgtccgagatgc
ggctccgccatcgacaccggggagcagcgctggcgctgcgagaacggccgcaactgccat
ctggtggcgtccctctcctacgccgtgggccgcgaccagctcgatgtggaggggctcggc
cacacccgggtcgtccagctcgtcgaggcgggcctggtcgccgatctcgccgatctgttc
gccctcacccgggagcagcttctcggtctggagcgcatgggcgagaccagcaccgacaac
ctcctcgccgcgctggacaccgccaggggacggccgctgtcgcgggtgctgtgcgcgctg
ggggtgcggggtaccggacgctccatgtcccgccggatcgcccggtacttcgccaccatg
gaccacctccgcgccgccgacgccgaggcgatccagcgggtcgagggcatcggcaccgag
aaggccccgtccatcgtggccgaactcgccgaactcgccccgctcatcgacaggctcacg
gcggccggggtgaacatgaccgagccgggcgccacaccgcccgccccggccgacgccgag
tccgccgacgccggcaccggcgcgggcgcgggcacgggcacgggcacgggcacgggcacg
ggcacgggcacgggcgagggcacgggcgagggcgccgacggcaccgacagcatcggcggc
gacgctccgcagccgtcctcggagcccggcgggccgctcgccgggatggccgtggtggtc
acgggcgcgatgaccggcgtcctggagaagctcagccgcaaccagatgaacgaactcatc
gaacgggccggcggacgcgcctcctccagcgtctccaagaagacctccctggtcgtcgcg
ggcgagaacgccggctccaagcgcgccaaggccgagaccctcggcatccggctggccgcc
ccggacgagttcgccgccctggtggccgacttcctggactga
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