Streptomyces phaeoluteigriseus: NFX46_07355
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Entry
NFX46_07355 CDS
T08568
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sphw
Streptomyces phaeoluteigriseus
Pathway
sphw03030
DNA replication
sphw03410
Base excision repair
sphw03420
Nucleotide excision repair
sphw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sphw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NFX46_07355 (ligA)
03410 Base excision repair
NFX46_07355 (ligA)
03420 Nucleotide excision repair
NFX46_07355 (ligA)
03430 Mismatch repair
NFX46_07355 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphw03032
]
NFX46_07355 (ligA)
03400 DNA repair and recombination proteins [BR:
sphw03400
]
NFX46_07355 (ligA)
Enzymes [BR:
sphw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NFX46_07355 (ligA)
DNA replication proteins [BR:
sphw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NFX46_07355 (ligA)
DNA repair and recombination proteins [BR:
sphw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NFX46_07355 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NFX46_07355 (ligA)
MMR (mismatch excision repair)
DNA ligase
NFX46_07355 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NFX46_07355 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
NHase_beta_N
Motif
Other DBs
NCBI-ProteinID:
USQ83622
LinkDB
All DBs
Position
1606045..1608240
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDRQAETTVPSEAREKHAQLAEQIEEHRFRYYVKDAPVVSDAEFDRLLRSLEALEEQY
PELRTPDSPTQKVAGAYETEFTAVQHRERMLSLDNAFDDLELAAWAERVHKDVGASAYHF
LCELKVDGLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLTGHGVPSLVEI
RGEVYFPMEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTANRPLHMVVHGIGAL
EGYEGLTRLSEAYDLLKSWGLPTSRHNKVVDDLDGVRAFIAYYGENRHSVEHEIDGVVVK
LDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLLNIRVGVGRTGRVTPYAQVEPVTVAG
SEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPSECPE
CDTPLRPMKEGDVDLRCPNARACPAQLRERLFYLAGRKALDIDHFGYVSAAALTKPLEPE
QPPLTDEGDLFDLTIEQLLPIKAYVLDQNSGLPKRDPKTGEEKIVTVFANQQGEPKKNAL
AMLDTIAAAKERPLVRILTGLSIRHVGPVAAEALAREFRSIDRIEQASEEELAGTDGVGP
IIAASLKEWFAEDWHREIIRKWKAAGVRMEEEGSGEDEGPRPLEGLTVVVTGTLEHFTRD
GAKDALQSRGAKVTGSVSKKTSFVVVGDSPGSKYDKAMQLKVPVLDEDGFTVLLEQGAEA
AAEVALPVPES
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaggcaagcggagacgacggtgccctcggaggcgcgggagaagcacgcg
cagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgcccccgtc
gtcagtgacgcggagttcgaccgcctcctgcgctccctggaggcgctggaggagcagtac
cccgagctgcgcaccccggactcgccgacccagaaggtagcgggggcgtacgagacggag
ttcaccgccgtccagcaccgcgagcgcatgctgtcgctggacaacgccttcgacgatctg
gagctggccgcctgggcagagcgcgtccacaaggacgtcggcgcctccgcgtaccacttc
ctgtgcgagctgaaggtcgacggactcgccgtcaacctgacgtacgagaacggccggctg
acccgcgcggccacccgcggcgacggccggaccggcgaggacatcacgcccaacgtgcgg
accatcgcggagatcccggaccggctgaccggacacggcgtcccgtccctcgtcgagatc
cgcggcgaggtctacttcccgatggagaagttcgaggagctgaacgcccgtctggtcgag
gccggcgacaagcccttcgccaatccgcgcaacgcggccgccggttcgctgcgccagaag
gacccgcgcgtcaccgccaaccgccccctgcacatggtggtccacggcatcggcgccctg
gaggggtacgagggcctcacccgcctctccgaggcgtacgacctcctcaagtcctggggc
ctgcccacctcccggcacaacaaggtggtcgacgacctcgacggcgtacgggcgttcatc
gcgtactacggcgagaaccggcactccgtggagcacgagatcgacggtgtcgtcgtcaag
ctcgacgagatccggctccaggggcggctcggctccacggcccgcgcgccgcgctgggcg
atcgcgtacaagtacgcgccggaggaggtcaacaccaagctcctcaacatccgcgtgggc
gtgggccgcaccggccgcgtcaccccgtacgcccaggtcgagccggtgaccgtggccggt
tccgaggtcgagttcgcgaccctgcacaaccaggacgtcgtcaaggccaagggcgtcctc
atcggcgacaccgtggtgctgcgcaaggccggtgacgtcatcccggagatcctcggtccg
gtcgccgacctgcgggacggcagcgagcgcgagttcgtcatgccgtcggagtgccccgag
tgcgacaccccgctgcggccgatgaaggagggcgacgtcgacctgcgctgccccaacgcc
cgtgcctgcccggcccagttgcgcgagcgcctcttctacctcgccggccgcaaggccctg
gacatcgaccacttcgggtacgtctccgccgcggccctgaccaagccgctggagcccgag
cagccgccgctgaccgacgagggcgacctgttcgacctcaccatcgagcaactgctgccc
atcaaggcgtacgtcctcgaccagaacagcggactgcccaagcgggacccgaagaccggc
gaggagaagatcgtcaccgtcttcgccaaccagcagggcgagccgaagaagaacgcgctc
gccatgctggacaccatcgcggcagccaaggagcgcccgctggtccgcatcctcaccggc
ctgtccatccggcacgtggggccggtcgcggccgaggcgctggcccgcgagttccgctcc
atcgaccgcatcgaacaggcgagcgaggaggagctggccgggaccgacggggtcggcccg
atcatcgcggcctccctcaaggagtggttcgccgaggactggcaccgcgagatcatccgc
aagtggaaggccgccggcgtccgcatggaggaggagggctccggcgaggacgagggcccg
cgcccgctggaaggcctcaccgtcgtggtcaccggcaccctggagcacttcacccgggac
ggcgccaaggacgccctccagagccgcggggcgaaggtgaccggatcggtctcgaagaag
acctcgttcgtcgttgtgggtgacagccccggatcgaagtacgacaaggccatgcagctg
aaggttccggtgctggacgaggacggcttcacggtcctcctcgaacaaggggcggaggcg
gccgccgaagtcgccctgccggtccccgagtcgtga
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